View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6809_low_18 (Length: 222)
Name: NF6809_low_18
Description: NF6809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6809_low_18 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 20749698 - 20749919
Alignment:
| Q |
1 |
cacttgaaatgtgtgaaatgtgtcgtatttgtgtacatgccttggtgaattatgtggactatgtgatttgatgattgttgacatatgtggagttgtggac |
100 |
Q |
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| T |
20749698 |
cacttgaaatgtgtgaaatgtgtcgtatttgtgtacatgacttggtgaattatgtggactatgtgatttgatgattgttgacatatgtggagttgtggac |
20749797 |
T |
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| Q |
101 |
tttatatgttgtattgattttcttgagaaataatgtcgatatgataatctatctggaatctggattaatgttcatttgattatgtttatttgtggaatat |
200 |
Q |
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| T |
20749798 |
tttatatgttgtattgatatacttgagaaataatgtcgatatgataatctatctggaatctggattaatgttcatttgattatgtttatttgtggaatat |
20749897 |
T |
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| Q |
201 |
aaactaaccccaagtgatcgtt |
222 |
Q |
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| T |
20749898 |
aaactaacctcgagtgatcgtt |
20749919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 17543135 - 17543349
Alignment:
| Q |
1 |
cacttgaaatgtgtgaaatgtgtcgtatttgtgtacatgccttggtgaattatgtggactatgtgatttgatgattgttgacatatgtggagttgtggac |
100 |
Q |
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|||| ||||||||||||||||||| |||||| ||| || ||||||||| |||||| ||||||||||||||||| ||| | |||||| |||||||| | |
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| T |
17543135 |
cactagaaatgtgtgaaatgtgtcatatttgattacttgacttggtgaaatatgtgaactatgtgatttgatgaatgtcggaatatgtagagttgtgaat |
17543234 |
T |
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| Q |
101 |
tt-tatatgttgtattgattttcttgagaaataatgtcgatatgataatctatctggaatctggattaatgttcatttgattatgtttatt-tgtggaat |
198 |
Q |
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| T |
17543235 |
ttgtatatgttgtattgatatgcttgaggaataacgtcgatacgataattcatttggaattttgattaatatttatttgattatgtttattatgtggaat |
17543334 |
T |
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| Q |
199 |
ataaactaaccccaa |
213 |
Q |
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| T |
17543335 |
attatctacccccaa |
17543349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 30190836 - 30191032
Alignment:
| Q |
7 |
aaatgtgtgaaatgtgtcgtatttgtgtacatgccttggtgaattatgtggactatgtgatttgatgattgttgacatatgtggagttgtggactt-tat |
105 |
Q |
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| T |
30190836 |
aaatgtgtgaaatgtgccatatttaattacttgacttggtgaattatgtgggctatgtgatt-gatgaatgttgatatatatggagttgtggacttgtat |
30190934 |
T |
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| Q |
106 |
atgttgtattgattttcttgagaaataatgtcgatatgataatctatctggaatctggattaatgttcatttgattatgtttatt-tgtggaatataa |
202 |
Q |
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| T |
30190935 |
attttgtattgatatgcttgagaaatattgtcgatgcgataattcatttggaatctcgattaatatttatttgattatgtttattatgtggaatataa |
30191032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 34178834 - 34178923
Alignment:
| Q |
123 |
ttgagaaataatgtcgatatgataatctatctggaatctggattaatgttcatttgattatgtttatttgtggaatataaactaacccca |
212 |
Q |
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| T |
34178834 |
ttgagaaataatgtcgatatgacagttcatgtggaatctggattaatgtttatttgattatgtttatttgtggaatataatctaacccca |
34178923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 41 - 210
Target Start/End: Original strand, 13303384 - 13303552
Alignment:
| Q |
41 |
cttggtgaattatgtggactatgtgatttgatgattgttgacatatgtggagttgtggactttatatgttgtattgattttcttgagaaataatgtcgat |
140 |
Q |
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| T |
13303384 |
cttggtgaattatatggactatttgatt-gatgaatgttaacatgtgttgagttgtggattgtatatgttgtattgatatccttgagaagtaatgtcgat |
13303482 |
T |
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| Q |
141 |
atgataatctatctggaatctggattaatgttcatttgattatgtttatttgtggaatataaactaaccc |
210 |
Q |
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| T |
13303483 |
acgataattcatttggaatcttgattgatgtttacttgattatgtttatttgttgaatataatctaaccc |
13303552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 41 - 210
Target Start/End: Complemental strand, 18117949 - 18117778
Alignment:
| Q |
41 |
cttggtgaattatgtggactatgtgatttgatgattgttgacatatgtggagttgtggactt-tatatgttgta-ttgattttcttgagaaataatgtcg |
138 |
Q |
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|||||||||||||||| ||||||||| ||| ||| |||||| ||||||||||||| ||||| ||||||||||| ||||| | |||||||||||||||| |
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| T |
18117949 |
cttggtgaattatgtgaactatgtga-ttggtgaatgttgatatatgtggagttgcagacttgtatatgttgtatttgatatgtttgagaaataatgtcg |
18117851 |
T |
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| Q |
139 |
atatgataatctatctggaatctggattaatgttcatttgattatgtttatt-tgtggaatataaactaaccc |
210 |
Q |
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||| | ||| || |||||||| || |||| || ||||||||||||||||| ||| ||||||| ||||||| |
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| T |
18117850 |
atactaaaattcatttggaatcttgaataatctttatttgattatgtttattatgtaaaatataatctaaccc |
18117778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 15814233 - 15814278
Alignment:
| Q |
171 |
ttcatttgattatgtttatttgtggaatataaactaaccccaagtg |
216 |
Q |
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| T |
15814233 |
ttcatttgattatgtttaattgtggaatctgaactaacccccagtg |
15814278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 17910288 - 17910236
Alignment:
| Q |
171 |
ttcatttgattatgt-ttatttgtggaatataaactaaccccaagtgatcgtt |
222 |
Q |
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||||||||||||| | ||||||||||||||||| ||| ||||||||| ||||| |
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| T |
17910288 |
ttcatttgattatatattatttgtggaatataatctagccccaagtggtcgtt |
17910236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 8022177 - 8022137
Alignment:
| Q |
175 |
tttgattatgtttatttgtggaatataaactaaccccaagt |
215 |
Q |
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| T |
8022177 |
tttgattatgtttaattgtgaaatatgaactaaccccaagt |
8022137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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