View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6809_low_2 (Length: 718)

Name: NF6809_low_2
Description: NF6809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6809_low_2
NF6809_low_2
[»] chr1 (1 HSPs)
chr1 (14-718)||(34092365-34093069)


Alignment Details
Target: chr1 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 14 - 718
Target Start/End: Original strand, 34092365 - 34093069
Alignment:
Q  14 atggacatcacatcatatacaatctcctttgaaaacaaatcacatcatatacagactaagttttctattttttctaccaaaaattatttaatacaaggtt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34092365 atggacatcacatcatatacaatctcctttgaaaacaaatcacatcatatacagactaagttttctattttttctaccaaaaattatttaatacaaggtt 34092464  T
Q  114 aatcaaaatatttatttcatctttaacataacatcgnnnnnnnaaaatatctttcaaatttaattaaaacatcaatattggttttnnnnnnntctttaac 213  Q
    ||||||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||       ||||||||    
T  34092465 aatcaaaatatttatttaatctttaacataacatcgtttttttaaaatatctttcaaatttaattaaaacatcaaaattggttttaaaaaaatctttaac 34092564  T
Q  214 aagcctacaataaaagattttttaaattaattataattgctcgttaaaaaactgatttataaagtgagatattttatagttcatcctaattcaaatttca 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34092565 aagcctacaataaaagattttttaaattaattataattgctcgttaaaaaactgatttataaagtgagatattttatagttcgtcctaattcaaatttca 34092664  T
Q  314 ataataatattgataggttaatcatctttattcatgggttcgaacatgaaacttcaacgtttcgtattatttggatcaccattatcattttgtctgcaaa 413  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  34092665 ataataatattgataggttaatcacctttattcataggttcgaacatgaaacttcaacgtttcgtattatttggatcaccataatcatttcgtctgcaaa 34092764  T
Q  414 caaaaataaaaagaaagagatataactcttcataaacnnnnnnnnnnnnnnnnnnnaaatacatgattaggacttttctcaatgagaaactttgccaaag 513  Q
    |||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||||||||||| ||||||||||||||||    
T  34092765 caaaaataaaaagaaagagatataactcttcataaacttttttatttttagtttttaaatacatgattaggacttttctcaataagaaactttgccaaag 34092864  T
Q  514 tcagattgatattgaataattggctaaacaaatctcacattatatatacacaaccacttgaaataaaagaaacaattacattgtatgcaaatcattatcg 613  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34092865 tcagattgatattgaataattggcaaaacaaatctcacattatatatacacaaccacttgaaataaaagaaacaattacattgtatgcaaatcattatcg 34092964  T
Q  614 ttggctattagagcatatattaattcaaagatgaaaaagacattggtagctagaaaaatgaagaagaggcattaggttaggtatatgtgatgatgtccat 713  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  34092965 ttggctattagagcatatattaattcaaagatgaaaaagacattggtagctagaaaaatgaagaagaggcattaggttaggtaaatgtgatgatgtccac 34093064  T
Q  714 ctcat 718  Q
    |||||    
T  34093065 ctcat 34093069  T

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