View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6809_low_5 (Length: 376)
Name: NF6809_low_5
Description: NF6809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6809_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 22050006 - 22050205
Alignment:
| Q |
18 |
aacaaattccagtcctttccaaattcagtccatgattttttgcctttgttcctctttagaactttgcaactgaattcaaatccgtcaggtccaacaattc |
117 |
Q |
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| T |
22050006 |
aacaaattccagtcccttccgaattcagtccatgattttttgcctttcttcctctttagaactttgcaactgaattcaaatccgtcaggtccaacaattc |
22050105 |
T |
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| Q |
118 |
gcacatagtcatatccagtgcttctcacaaagtttgcaaagtcagtcttcaatgactaaataaagtaataaaaatatgttagattgatacttgttgtgtt |
217 |
Q |
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| T |
22050106 |
gcacgtagtcatatccagtgcttctcacaaagtttgcaaagtcagtcttcaatgactaaataaagtaataaaaatatgttagattgatacttgttatgtt |
22050205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 211 - 375
Target Start/End: Original strand, 22050229 - 22050394
Alignment:
| Q |
211 |
ttgtgttcaagtaagatataa-ggaacttactaatttaaattttgcggctgaaaactttgtgagggtaacttgaaatggtgccggctcaagcgcactgta |
309 |
Q |
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| T |
22050229 |
ttgtgttcaagtaagatataaaggaacttactaatttaaatttttcggctgaaaactttgtgagggtaacttgaaatggtgccggctcaagcgcactgta |
22050328 |
T |
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| Q |
310 |
tcgatagctatgataatttggtaattccaaaggattgaattgacgttgtcctacatcaacaccaaa |
375 |
Q |
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| T |
22050329 |
tcgatagctatgataatttcataattccaaaggattgaattgacgttgtcctacatcaataccaaa |
22050394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 22059336 - 22059487
Alignment:
| Q |
20 |
caaattccagtcctttccaaattcagtccatgattttttgcctttgttcctctttagaactttgcaactgaattcaaatccgtcaggtccaacaattcgc |
119 |
Q |
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|||||||||||| ||||||||| ||||||||||||| ||||||||||||| || ||||| ||||| | | | ||| ||| |||||| |||||| |
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| T |
22059336 |
caaattccagtcgcttccaaattaagtccatgattttctgcctttgttccttttcagaacattgcatgttattgcaattcctgttggtccatatattcgc |
22059435 |
T |
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| Q |
120 |
acatagtcatatccagtgcttctcacaaagtttgcaaagtcagtcttcaatg |
171 |
Q |
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| T |
22059436 |
acagagtcatatccggtgtttctcacatagtttgcgaaatctgtcttcaatg |
22059487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 31772156 - 31772103
Alignment:
| Q |
20 |
caaattccagtcctttccaaattcagtccatgattttttgcctttgttcctctt |
73 |
Q |
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|||||||||||| ||||||| |||||||| ||| | ||||||||||||||||| |
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| T |
31772156 |
caaattccagtcacttccaaactcagtccaagatctgttgcctttgttcctctt |
31772103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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