View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6812_high_10 (Length: 292)

Name: NF6812_high_10
Description: NF6812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6812_high_10
NF6812_high_10
[»] chr1 (1 HSPs)
chr1 (1-292)||(2747009-2747294)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 2747294 - 2747009
Alignment:
Q  1 acttcacccaaaccaaactaacaaca---caaaaacacactttctctcttttgcaacttcacttcttcatatctctgaaacatccttcaattcaacacta 97  Q
    |||||||||||||||||| |||||||   ||||||||||||||||||||||||||||||||        ||||||| |||||||||||||     |||||    
T  2747294 acttcacccaaaccaaaccaacaacaacacaaaaacacactttctctcttttgcaacttca--------tatctctcaaacatccttcaa-----cacta 2747208  T
Q  98 taatagctacctagtaccttgttctctaacacacagaca----cacttgttttgtttcttttgttaagttttatggcttaccaaaaccaacatctttcac 193  Q
    |||||||||||||||||| |||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2747207 taatagctacctagtaccctgttctctaacacacaaacatacacacttgttttgtttcttttgttaagttttatggcttaccaaaaccaacatctttcac 2747108  T
Q  194 aagagttaccaatccaacatttcacagaccaaaccaacaacaataacaacaactcattccgttccatattaccagactcacccgaccctaacaccaaac 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2747107 aagagttaccaatccaacatttcacagaccaaaccaacaacaataataacaactcattccgttccatattaccagactcacccgaccctaactccaaac 2747009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University