View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6812_high_11 (Length: 280)
Name: NF6812_high_11
Description: NF6812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6812_high_11 |
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| [»] scaffold0911 (1 HSPs) |
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| [»] scaffold0196 (1 HSPs) |
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| [»] scaffold0162 (1 HSPs) |
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Alignment Details
Target: scaffold0911 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0911
Description:
Target: scaffold0911; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 275
Target Start/End: Original strand, 2764 - 3028
Alignment:
| Q |
11 |
aggaggaggagtaccctttgcacgggtgttatacgaagctttacccagaacttgctttttcaatgtttgttgctgcttcttggataacacttgcgtgaag |
110 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2764 |
aggaggaggagtaccctttgcacgggttttatacgaagctttacccagaacttgctttttcaatgtttgttgctgcttcttggataacacttgcgtgaag |
2863 |
T |
|
| Q |
111 |
ccttctgctaccatccgttgatcatactcgcgaatgcgggcccataaatccaagtaatgttgtacattttttgtgactggaatttcgtggtgtggaaaag |
210 |
Q |
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||||||| | |||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||| |||||| ||| || |
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| T |
2864 |
ccttctgttgccatccgttgatcatactcgcgaatgcgagcccataaatccaagtcattttgtacattttttgtgactggaatttcatggtgtcgaatag |
2963 |
T |
|
| Q |
211 |
aaccagcacgcgcaggtgcaacattcatgtcagtatcatcctcgcgtgtagtatgtgctatctca |
275 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2964 |
aaccagcacgcgcaggtgcaacattcatgtcagtatcatcctggcgtgtagtatgtgctatctca |
3028 |
T |
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Target: scaffold0196 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 331 - 224
Alignment:
| Q |
2 |
tcattgagaaggaggaggagtaccctttgcacgggtgttatacgaagctttacccagaacttgctttttcaatgtttgttgctgcttcttggataacact |
101 |
Q |
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|||||||||| || ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
331 |
tcattgagaatgatgaggattaccctttgcacgggtgttatacgaagctttacccataacttgctttttcaatgtttgttgctgcttcttggataacact |
232 |
T |
|
| Q |
102 |
tgcgtgaa |
109 |
Q |
| |
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|||||||| |
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|
| T |
231 |
tgcgtgaa |
224 |
T |
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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 41068212 - 41068033
Alignment:
| Q |
2 |
tcattgagaaggaggaggagtaccctttgcacgggtgttatacgaagctttacccagaacttgctttttcaatgtttgttgctgcttcttggataacact |
101 |
Q |
| |
|
|||||||||||| |||| | |||||| ||||||||||| ||||||||||| || | ||||||||||||||||||||| ||||| || || || || ||| |
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| T |
41068212 |
tcattgagaagggggagttgaacccttcgcacgggtgttgtacgaagctttccctaaaacttgctttttcaatgtttgctgctgttttttagacaaaact |
41068113 |
T |
|
| Q |
102 |
tgcgtgaagccttctgctaccatccgttgatcatactcgcgaatgcgggcccataaatccaagtaatgttgtacattttt |
181 |
Q |
| |
|
|||||||| ||||| ||| |||| |||||||| ||||| |||||||| |||||||||||||||| || ||| |||||||| |
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|
| T |
41068112 |
tgcgtgaatccttcggctgccatacgttgatcttactcccgaatgcgagcccataaatccaagtcattttgaacattttt |
41068033 |
T |
|
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Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 19936354 - 19936533
Alignment:
| Q |
2 |
tcattgagaaggaggaggagtaccctttgcacgggtgttatacgaagctttacccagaacttgctttttcaatgtttgttgctgcttcttggataacact |
101 |
Q |
| |
|
|||||||||||| |||| | |||||| ||||||||||| ||||||||||| || | ||||||||||||||||||||| ||||| || || || || || |
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| T |
19936354 |
tcattgagaagggggagttgaacccttcgcacgggtgttgtacgaagctttccctaaaacttgctttttcaatgtttgctgctgttttttagacaaaacc |
19936453 |
T |
|
| Q |
102 |
tgcgtgaagccttctgctaccatccgttgatcatactcgcgaatgcgggcccataaatccaagtaatgttgtacattttt |
181 |
Q |
| |
|
|||||||| ||||| || |||| | |||||||||||| |||||||| |||||||||||||||| || ||| |||||||| |
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|
| T |
19936454 |
tgcgtgaatccttcggcggccatacattgatcatactcccgaatgcgagcccataaatccaagtcattttgaacattttt |
19936533 |
T |
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Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 8479846 - 8479667
Alignment:
| Q |
2 |
tcattgagaaggaggaggagtaccctttgcacgggtgttatacgaagctttacccagaacttgctttttcaatgtttgttgctgcttcttggataacact |
101 |
Q |
| |
|
|||||||||||| |||| | |||||| |||||||||| ||||||| ||| || | ||||||||||||||||||||| ||||| || || || || ||| |
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|
| T |
8479846 |
tcattgagaagggggagttgaacccttcacacgggtgttgtacgaagttttccctaaaacttgctttttcaatgtttgctgctgttttttagacaaaact |
8479747 |
T |
|
| Q |
102 |
tgcgtgaagccttctgctaccatccgttgatcatactcgcgaatgcgggcccataaatccaagtaatgttgtacattttt |
181 |
Q |
| |
|
|||||||| ||||| ||| |||| |||||||||||||| |||||||| ||| |||||||||||| || ||| |||||||| |
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| T |
8479746 |
tgcgtgaatccttcggctgccatacgttgatcatactcccgaatgcgagcctataaatccaagtcattttgaacattttt |
8479667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 157
Target Start/End: Complemental strand, 10996998 - 10996850
Alignment:
| Q |
9 |
gaaggaggaggagtaccctttgcacgggtgttatacgaagctttacccagaacttgctttttcaatgtttgttgctgcttcttggataacacttgcgtga |
108 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||| ||||| || | |||| |||||||| || || ||||| |||||||||| |||||||| | |
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| T |
10996998 |
gaaggaggatgcgtaccctttgcacgggtgttatacgaggcttttcctaacactttctttttcactgcctgctgctgtttcttggatagaacttgcgtaa |
10996899 |
T |
|
| Q |
109 |
agccttctgctaccatccgttgatcatactcgcgaatgcgggcccataa |
157 |
Q |
| |
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| |||| | |||||| ||||||||| || ||||| ||| ||||||| |
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| T |
10996898 |
aatcttcgtccgccatccattgatcatattcacgaattcggacccataa |
10996850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 10032986 - 10033165
Alignment:
| Q |
2 |
tcattgagaaggaggaggagtaccctttgcacgggtgttatacgaagctttacccagaacttgctttttcaatgtttgttgctgcttcttggataacact |
101 |
Q |
| |
|
|||||||||||| |||| | |||||| ||||||||||| ||||||||||| || | ||| ||||||||||||||||| ||||| || || ||||| ||| |
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|
| T |
10032986 |
tcattgagaagggggagttgaacccttcgcacgggtgttgtacgaagctttccctaaaacatgctttttcaatgtttgctgctgttttttagataaaact |
10033085 |
T |
|
| Q |
102 |
tgcgtgaagccttctgctaccatccgttgatcatactcgcgaatgcgggcccataaatccaagtaatgttgtacattttt |
181 |
Q |
| |
|
|||||||| ||||| | |||| |||||||||||||| |||||| | |||||||||||||||| || ||| |||||||| |
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|
| T |
10033086 |
tgcgtgaatccttcgcttgccatacgttgatcatactcccgaatgtgagcccataaatccaagtcattttgcacattttt |
10033165 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 43022049 - 43022143
Alignment:
| Q |
21 |
gtaccctttgcacgggtgttatacgaagctttacccagaacttgctttttcaatgtttgttgctgcttcttggataacacttgcgtgaagccttc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| || || | |||||| |||||| || || || ||||||||||| || |||||||| || ||||| |
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|
| T |
43022049 |
gtaccctttgcacgggtgttatacgaagcgtttcctaacacttgccttttcactgcctgctgttgcttcttggacaatacttgcgtaaaaccttc |
43022143 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0162 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0162
Description:
Target: scaffold0162; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 5215 - 5290
Alignment:
| Q |
200 |
gtgtggaaaagaaccagcacgcgcaggtgcaacattcatgtcagtatcatcctcgcgtgtagtatgtgctatctca |
275 |
Q |
| |
|
|||||||||| ||| | ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
5215 |
gtgtggaaaataacaaacacgcgcaggtgcaacattcacgtcagtatcatcctcgcgtgtagtatttgctatctca |
5290 |
T |
|
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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 163
Target Start/End: Complemental strand, 26657347 - 26657199
Alignment:
| Q |
15 |
ggaggagtaccctttgcacgggtgttatacgaagctttacccagaacttgctttttcaatgtttgttgctgcttcttggataacacttgcgtgaagcctt |
114 |
Q |
| |
|
||||||||||||||||| |||||||| |||| ||| || || | |||||| |||| | || |||||||||||| |||||||| ||||| |||||||||| |
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|
| T |
26657347 |
ggaggagtaccctttgcccgggtgttgtacggagcctttcctaacacttgccttttaactgcttgttgctgctttttggataaaacttgtgtgaagcctt |
26657248 |
T |
|
| Q |
115 |
ctgctaccatccgttgatcatactcgcgaatgcgggcccataaatccaa |
163 |
Q |
| |
|
| | |||||||||||||||| || ||||| || ||| |||||||||| |
|
|
| T |
26657247 |
catccgccatccgttgatcatattcacgaatacgtgcctataaatccaa |
26657199 |
T |
|
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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 165
Target Start/End: Complemental strand, 1633081 - 1632938
Alignment:
| Q |
22 |
taccctttgcacgggtgttatacgaagctttacccagaacttgctttttcaatgtttgttgctgcttcttggataacacttgcgtgaagccttctgctac |
121 |
Q |
| |
|
||||||||||| |||||||||||||||| || || | ||||||||||||| || | || ||||||||||| || |||||||| || | ||| | | |
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|
| T |
1633081 |
taccctttgcatgggtgttatacgaagcgtttcctaacacttgctttttcactgcccgctgttgcttcttggacaatacttgcgtaaaactttcatccgc |
1632982 |
T |
|
| Q |
122 |
catccgttgatcatactcgcgaatgcgggcccataaatccaagt |
165 |
Q |
| |
|
| ||||||| ||||| || | ||| || |||||||||||||||| |
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|
| T |
1632981 |
cgtccgttggtcatattcacaaatacgagcccataaatccaagt |
1632938 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 31634647 - 31634751
Alignment:
| Q |
11 |
aggaggaggagtaccctttgcacgggtgttatacgaagctttacccagaacttgctttttcaatgtttgttgctgcttcttggataacacttgcgtgaag |
110 |
Q |
| |
|
||||||||| ||||||||||| ||||| || ||| |||| || || | ||||||||||| | || ||||||||| |||||||| ||||||||||| |
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|
| T |
31634647 |
aggaggaggggtaccctttgctcgggtattgtacaaagcctttcctaacacttgcttttttgcttctttttgctgctttttggataatacttgcgtgaat |
31634746 |
T |
|
| Q |
111 |
ccttc |
115 |
Q |
| |
|
||||| |
|
|
| T |
31634747 |
ccttc |
31634751 |
T |
|
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