View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6812_high_13 (Length: 247)
Name: NF6812_high_13
Description: NF6812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6812_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 26 - 239
Target Start/End: Complemental strand, 46309535 - 46309319
Alignment:
| Q |
26 |
agacaatcatagtttgtcaactacacgcacacacatcataacacataaacacaatagattaaaatttatactaaagatatcaaacaacaactcataacac |
125 |
Q |
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| T |
46309535 |
agacaatcatagtttgtcaattacacgcacacacatcataacacataaacacagtagattaaaatttatactaaagatatcaaacaacaactcatcacac |
46309436 |
T |
|
| Q |
126 |
aaaatacgccttcaccgtgtagtgttgatgctacataggtcaaataggttgtggaacaaattttcaaaaca---agaaactttaattaccacaggacata |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
46309435 |
aaaatacgccttcaccgtgtagtgttgatgctacataggtcaaataggttgtggaacaaattttcaaaacaagaagaaactttaattaccacaggacata |
46309336 |
T |
|
| Q |
223 |
aactccataaatactaa |
239 |
Q |
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||||||||||||||||| |
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| T |
46309335 |
aactccataaatactaa |
46309319 |
T |
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