View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6812_high_18 (Length: 235)
Name: NF6812_high_18
Description: NF6812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6812_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 46309003 - 46308776
Alignment:
| Q |
1 |
tataaacccaaatggtcatcctttctatttgttaaggttatatataattatggaaatatcaaaacactgaaaagagtagtctttactttaacccttcatt |
100 |
Q |
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| T |
46309003 |
tataaacccaaatggtcatcctttctattttttaaggttatatataattatggaaatatcaaaacactgaaaagagtagtctttactttaacccttcatt |
46308904 |
T |
|
| Q |
101 |
aacttttgtcttaatcgagtcatgaatcacaatgggaagatgctgagtcaaagagagctcttggatatgacatccccaaaacgaacaaaccattgagcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46308903 |
aacttttgtcttaatcgagtcatgaatcacaatgggaagatgctgagtcaaagagagctcttggatatgacatccccaaaacgaacaaaccattgagcat |
46308804 |
T |
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| Q |
201 |
tagacaaattgttatcctgctgaggttg |
228 |
Q |
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||||||| |||||||||||||||||||| |
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| T |
46308803 |
tagacaagttgttatcctgctgaggttg |
46308776 |
T |
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