View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6812_high_20 (Length: 227)
Name: NF6812_high_20
Description: NF6812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6812_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 9639987 - 9639803
Alignment:
| Q |
24 |
aatatcttcaattgaagtgtcagtagcgattctataggttgatgttttgtatcttaatttttatctccattgaaaaaatttaatgtgacaaaatacacaa |
123 |
Q |
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| T |
9639987 |
aatattttcaattgaagtgtcactaacgattctataggttgatgttttgtatcttaatttttatctccattgaaaaaatttaatgtggcaaaatacacaa |
9639888 |
T |
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| Q |
124 |
cataaacattgtggaagtatagtaaataagacacggtatcgttgaaattaatcaattaatatttaaatttgaggcaatattgagt |
208 |
Q |
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| T |
9639887 |
cataaacattgtggaagtatagtaaataagacacggtatcgttgaaattaatcaattaatatttaaatttgaggcaatattgagt |
9639803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 7559483 - 7559442
Alignment:
| Q |
167 |
gaaattaatcaattaatatttaaatttgaggcaatattgagt |
208 |
Q |
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| T |
7559483 |
gaaattaatcaattaatatttgaatttgagacaacattgagt |
7559442 |
T |
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