View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6812_high_23 (Length: 217)
Name: NF6812_high_23
Description: NF6812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6812_high_23 |
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| [»] scaffold0911 (1 HSPs) |
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| [»] scaffold0162 (1 HSPs) |
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Alignment Details
Target: scaffold0911 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0911
Description:
Target: scaffold0911; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 217
Target Start/End: Complemental strand, 3242 - 3032
Alignment:
| Q |
7 |
ctacgaccatgacctttacttatgaaaatgttagctcagccattcaccatgataagctgccttacacatttgctcatgtacttgaggaaatcaatgccac |
106 |
Q |
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| T |
3242 |
ctacgaccatgacctttacttatgaaaatgttagctcagccattcaccatgataagctgccttacacatctgctcatgtacttgaggaaatcaataccac |
3143 |
T |
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| Q |
107 |
agacattgaatcacaacatgataatgcaaggggtggcactgccgcaccacttcagcactcctcttttgatgttatggcttttgaacattcaacacaagca |
206 |
Q |
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| T |
3142 |
agacattgaatcacaacatgataatgcaaggggtgggactgccgcaccacttcagcactcctcttttgatgttatggcttttgaacattcaactcaagca |
3043 |
T |
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| Q |
207 |
caatccagacc |
217 |
Q |
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| T |
3042 |
caatccagacc |
3032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0162 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0162
Description:
Target: scaffold0162; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 5504 - 5298
Alignment:
| Q |
7 |
ctacgaccatgacctttacttatgaaaatgttagctcagccattcaccatgataagctgccttacacatttgctcatgtacttgaggaaatcaatgccac |
106 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||| |||| |
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| T |
5504 |
ctacggccatgacctttacttatgaaaatgttaactcagccattcactatgataagctgccttaaacatctgctcatgtacttgaggaaatcaataccac |
5405 |
T |
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| Q |
107 |
agacattgaatcacaacatgataatgcaaggggtggcactgccgcaccacttcagcactcctcttttgatgttatggcttttgaacattcaacacaagca |
206 |
Q |
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| T |
5404 |
agacattgaatcacaacatgataatgcaaagggtggcactgccgcaccacttcagcactcctcttttgatgttatggcttttgaacattcagcacaagca |
5305 |
T |
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| Q |
207 |
caatcca |
213 |
Q |
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| T |
5304 |
caatcca |
5298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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