View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6812_high_5 (Length: 413)
Name: NF6812_high_5
Description: NF6812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6812_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 5 - 394
Target Start/End: Original strand, 31127137 - 31127525
Alignment:
| Q |
5 |
gaagaatatattaaatgttggatcagagcgacggttaaaagaagctgctgctgaagtaagaggactcagccacaagaatcgttagggaaaagaaaaagga |
104 |
Q |
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| T |
31127137 |
gaagaaaatattaaatgttggatcagagcgacggttaaaagaagctgctgctgaagtaagaggactc-gccacaagaatcgttagggaaaagaaaaagga |
31127235 |
T |
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| Q |
105 |
gcttgaagaaaaatcatcgttggaatcattggatattctatcacgatttttaagttcaggtcattcagatgaatcttttgttgttgatattgtaataagc |
204 |
Q |
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| T |
31127236 |
gcttgaagaaaaatcatcgttggaatcattggatattctatcacgatttttaagttcaggtcattcagatgaatcttttgttgttgatattgtaataagc |
31127335 |
T |
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| Q |
205 |
tttattcttgctgggagagatacaacttcagctgcactcacttggttcttttggttactctctaagcatagtcatgtggagaatgagattctaaaggaag |
304 |
Q |
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| T |
31127336 |
tttattcttgctgggagagatacaacttcagctgcactcacttggttcttttggttactctctaagcatagtcatgtggagaatgagattctaaaggaag |
31127435 |
T |
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| Q |
305 |
ttatgggaaaatcggaaacggttaattacaatgaggtgaaggatatggtttacactcatgcggctttatgcgagagtatgagactgtatc |
394 |
Q |
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| T |
31127436 |
ttatgggaaaatcggaaacggttaattacaatgaggtgaaggatatggtttacactcatgcggctttatgtgagagtatgagactgtatc |
31127525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 30 - 394
Target Start/End: Original strand, 31077844 - 31078207
Alignment:
| Q |
30 |
gagcgacggttaaaagaagctgctgctgaagtaagaggactcagccacaagaatcgttagggaaaagaaaaaggagcttgaagaaaaatcatcgttggaa |
129 |
Q |
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| T |
31077844 |
gagcgacgattgaaagaagccgtcgctgaagtaagaggactt-gctacaagaatcgttagggaaaagaaaaaagagcttaaagaaaaagcaactttggaa |
31077942 |
T |
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| Q |
130 |
tcattggatattctatcacgatttttaagttcaggtcattcagatgaatcttttgttgttgatattgtaataagctttattcttgctgggagagatacaa |
229 |
Q |
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| T |
31077943 |
tcagttgatcttttatcgcggtttttaagttcgggtcattcggatgaatcatttgtagttgatattgtaataagctttattcttgctgggaaagatacaa |
31078042 |
T |
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| Q |
230 |
cttcagctgcactcacttggttcttttggttactctctaagcatagtcatgtggagaatgagattctaaaggaagttatgggaaaatcggaaacggttaa |
329 |
Q |
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| T |
31078043 |
cttcagctgcactcacgtggttcttttggctactctctaagcatagtcatgtggagaatgaaattctcaaagagattaccggaaaatcagaaatagttag |
31078142 |
T |
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| Q |
330 |
ttacaatgaggtgaaggatatggtttacactcatgcggctttatgcgagagtatgagactgtatc |
394 |
Q |
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| T |
31078143 |
ttacgatgaggtgaaggatatggtttatactcatgcgtcgttatgcgagagtatgagactttatc |
31078207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 30 - 387
Target Start/End: Original strand, 31131870 - 31132226
Alignment:
| Q |
30 |
gagcgacggttaaaagaagctgctgctgaagtaagaggactcagccacaagaatcgttagggaaaagaaaaaggagcttgaagaaaaatcatcgttggaa |
129 |
Q |
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||||||||||| |||||||||| ||||||||||| || ||| ||||||| ||| ||||||||||||||||| |||||| ||||||| | | |||||| |
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| T |
31131870 |
gagcgacggttgaaagaagctgtcgctgaagtaagggggctc-gccacaaaaattgttagggaaaagaaaaaagagcttaaagaaaaggaaaccttggaa |
31131968 |
T |
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| Q |
130 |
tcattggatattctatcacgatttttaagttcaggtcattcagatgaatcttttgttgttgatattgtaataagctttattcttgctgggagagatacaa |
229 |
Q |
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| T |
31131969 |
tcggtggatattttgtcgcgatttttaagttctggtcattcggacgaatcttttgtagttgatattgtgataagctttattcttgctgggagagatacaa |
31132068 |
T |
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| Q |
230 |
cttcagctgcactcacttggttcttttggttactctctaagcatagtcatgtggagaatgagattctaaaggaagttatgggaaaatcggaaacggttaa |
329 |
Q |
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|||||||||||||||| |||||||||| |||| ||||||||||||||||||| |||||||||||||| || || ||| ||||||| | |||| |
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| T |
31132069 |
cttcagctgcactcacgtggttctttttgttaatctctaagcatagtcatgtagagaatgagattcttaaagagattactagaaaatcaatgatagttag |
31132168 |
T |
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| Q |
330 |
ttacaatgaggtgaaggatatggtttacactcatgcggctttatgcgagagtatgaga |
387 |
Q |
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| T |
31132169 |
taacgatgaggtgaagaatatggtttacactcatgcatcgttatgcgagagtatgaga |
31132226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 31128817 - 31129011
Alignment:
| Q |
5 |
gaagaatatattaaatgttggatcagagcgacggttaaaagaagctgctgctgaagtaagaggactcagccacaagaatcgttagggaaaagaaaaagga |
104 |
Q |
| |
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|||||| ||||||||||||||||| || |||| |||||||||| | | |||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
31128817 |
gaagaaaatattaaatgttggatccaagaaacggctaaaagaagccgtcgttgaagtaagaggactc-gccacaagaatcgttagggaaaagaaaaaaga |
31128915 |
T |
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| Q |
105 |
gcttgaagaaaaatcatcgttggaatcattggatattctatcacgatttttaagttcaggtcattcagatgaatcttttgttgttgatattgtaat |
200 |
Q |
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| T |
31128916 |
gtttgtagaaaaatcagtgttggaatcattggttattctaccacgacgcttgagttacgcacattcagaagaatcttttgcagttgatattgtaat |
31129011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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