View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6812_high_6 (Length: 377)
Name: NF6812_high_6
Description: NF6812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6812_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 34 - 358
Target Start/End: Complemental strand, 33306945 - 33306621
Alignment:
| Q |
34 |
cctattcattataaataagcataagttcaatttggttaataaatcaagtatatgtaactatatttgtaacatgactaaactacaacattctttgttattt |
133 |
Q |
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| T |
33306945 |
cctattcattataaataagcataagttcaatttggttaataaatcaagtatatgtaactatctttgtaacatgactaaactacaacattctttgttattt |
33306846 |
T |
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| Q |
134 |
agatggttctattggtaaagccatccgcttcacgctggctgcctccttagccggtttgactgccgttgctgccgcctcgcattaccggcgagaaacatcc |
233 |
Q |
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| T |
33306845 |
agatggttctattggtaaagccatccgcttcacgctggctgcctccttagccggtttgactgccgtggccaccgcctcgcattaccggcgacaaacatcc |
33306746 |
T |
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| Q |
234 |
aaggtgggagtagaccagaagatcattccccaagtagataaaaaacaatctggtcgtttagaaaagattgaaaaattctctgactatgttggtatgtttt |
333 |
Q |
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| T |
33306745 |
aaggtgggagtagaccagaagatcattccccaagtagataaaaaacaatctggtcgtttagaaaagattgaaaaattctctgactatgttggtatgtttt |
33306646 |
T |
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| Q |
334 |
acctttttgtgaattctcttgcaaa |
358 |
Q |
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| T |
33306645 |
acctttttgtgaattctcttgcaaa |
33306621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 330
Target Start/End: Complemental strand, 33253533 - 33253455
Alignment:
| Q |
252 |
aagatcattccccaagtagataaaaaacaatctggtcgtttagaaaagattgaaaaattctctgactatgttggtatgt |
330 |
Q |
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| T |
33253533 |
aagatcattcctcacgttgatagaacagaatctggtcgtttggaaaagatagaaaagttctcccactatgttggtatgt |
33253455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 330
Target Start/End: Complemental strand, 33273705 - 33273627
Alignment:
| Q |
252 |
aagatcattccccaagtagataaaaaacaatctggtcgtttagaaaagattgaaaaattctctgactatgttggtatgt |
330 |
Q |
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||||||||||| || || |||| || | ||||||||||||| |||||||| ||||| ||||| ||||||||||||||| |
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| T |
33273705 |
aagatcattcctcacgttgatagaacagaatctggtcgtttggaaaagatagaaaagttctcccactatgttggtatgt |
33273627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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