View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6812_low_1 (Length: 597)
Name: NF6812_low_1
Description: NF6812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6812_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 7 - 326
Target Start/End: Complemental strand, 1254410 - 1254091
Alignment:
| Q |
7 |
aatatggatcaccaagcagatgctaacagaactgatttgatgacaataacaaggtttgttctgaatgagcaatcaaagtatgctgaatcacgtggggatt |
106 |
Q |
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| T |
1254410 |
aatatggatcaccaagcagatgctaacagaactgatttgatgacaataacaaggtttgttctgaatgagcaatcaaagtatgctgaatcacgtggggatt |
1254311 |
T |
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| Q |
107 |
tcaccattctcatcaatcacattgttcttggctgcaaatttgtttgttcttctgttaacaaggtacacactctcatgtcattcattttgattagacaaaa |
206 |
Q |
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| T |
1254310 |
tcaccattctcatcaatcacattgttcttggctgcaaatttgtttgttcttctgttaacaaggtacacactctcatgtcattcatttttattagacaaaa |
1254211 |
T |
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| Q |
207 |
ttcacagttacttttgttttctatttttaccattgattgaacgtttataannnnnnnactgtgacaggctggattggcaaaaatcctaggacttgctgga |
306 |
Q |
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| T |
1254210 |
ttcacagttacttttgttttctatttttaccattgattgaacgtttataatttttttactgtgacaggctggattggcaaaaatcctaggacttgctgga |
1254111 |
T |
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| Q |
307 |
gacaccaatgttcaagtcag |
326 |
Q |
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| T |
1254110 |
gacaccaatgttcaagtcag |
1254091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 359 - 582
Target Start/End: Complemental strand, 1254057 - 1253834
Alignment:
| Q |
359 |
aagaacgttacgtgttcgtgttaatatgtgactttgtcacaccatataaatcttttttgtgtgatagcgacaccatctaaatctgaaataatattatgac |
458 |
Q |
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| T |
1254057 |
aagaacgttacgtgttcgtgttaatatgtgactttgtcacaccatctaaatcttttttgtgtgatagcgataccatctaaatctgaaataatattatgac |
1253958 |
T |
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| Q |
459 |
nnnnnnnncattatttatttaatgagtttaatggacataccatataattctctcnnnnnnnnnnnnnnnnnntctctcatataatagtactaatttctac |
558 |
Q |
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| T |
1253957 |
aaaaaaaacattatttatttaatgagtttaatggacataccatataattctctcaaaaaaaaataaaaaaattctctcatataatagtactaatttctac |
1253858 |
T |
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| Q |
559 |
tatccttataaaagtgggtgatgt |
582 |
Q |
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| T |
1253857 |
tatccttataaaagtgggtgatgt |
1253834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 12627250 - 12627379
Alignment:
| Q |
43 |
ttgatgacaataacaaggtttgttctgaatgagcaatcaaagtatgctgaatcacgtggggatttcaccattctcatcaatcacattgttcttggctgca |
142 |
Q |
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| T |
12627250 |
ttgatgaccataacacgttttgtgttgaatgaacagtctaagcatcctgaatcacgtggagatttcaccatcttgcttaataacattgttcttggttgca |
12627349 |
T |
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| Q |
143 |
aatttgtttgttcttctgttaacaaggtac |
172 |
Q |
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| T |
12627350 |
aatttgtttgttctgctgttaacaaggtac |
12627379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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