View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6812_low_10 (Length: 304)
Name: NF6812_low_10
Description: NF6812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6812_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 30732770 - 30732479
Alignment:
| Q |
7 |
gaatccaattcaactcaagccgcaattcgtcaatccatttgtagcatcctatatgaggttttgtccacgacagaatttgcagcagtccttggacgcctta |
106 |
Q |
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| T |
30732770 |
gaatccaattcaactcaagccgcaattcgtcaatccatttgtagcatcctatatgaggttttgcccacgacagaatttgcagcagtccttggaagcctta |
30732671 |
T |
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| Q |
107 |
cagtttaagtgccggaccaattagtgagtagagtagcagcatgtgcactcacagtagcaggcaccactacttcattataccaaatattgtagttccttta |
206 |
Q |
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| T |
30732670 |
cagtttaagtgccggaccaattagtgagtagagtagcagcatgtgcactcacagtagcaggcaccactacttcattataccaaatattgtagttccttta |
30732571 |
T |
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| Q |
207 |
tttcctgattaaaattctgcaacacacagacaaaaaattctgctccagtccgagagtgtgaagtatgctgttgaatgaaatttcgaagacca |
298 |
Q |
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| T |
30732570 |
tttcctgattaaaattctgcaacacgcagacaaaaaattctgctccagtccgagagtgcgaagtatactgttgaatgaaatttcgaagacca |
30732479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 298
Target Start/End: Original strand, 14668429 - 14668721
Alignment:
| Q |
7 |
gaatccaattcaactcaagccgcaattcgtcaatccatttgtagcatcctatatgaggttttgtccacgacagaatttgcagcagtccttggacgcctta |
106 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14668429 |
gaatccaattgaactcaagccgcaattcgtcaatccatttgtagcatcctatataaggttttgtccacgacagaatttgcagcagtccttggacgcctta |
14668528 |
T |
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| Q |
107 |
cagtttaagtgccggaccaattagtgagtagagtagcagcatgtgcactcacagtagcaggcaccactacttcattata-ccaaatattgtagttccttt |
205 |
Q |
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| T |
14668529 |
cagtttaagtgccggaccaattagtgagtaaagtagcagcatgtgcactcacagtagcaggcaccactacttcattatacccaaatattgtagttccttt |
14668628 |
T |
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| Q |
206 |
atttcctgattaaaattctgcaacacacagacaaaaaattctgctccagtccgagagtgtgaagtatgctgttgaatgaaatttcgaagacca |
298 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14668629 |
atttcctgattaaaattctgcaacacgcagacaaaaaattatgctccagtccgagagtgcgaagtatgctgttgaatgaaatttcgaagacca |
14668721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 14707411 - 14707193
Alignment:
| Q |
7 |
gaatccaattcaactcaagccgcaattcgtcaatccatttgtagcatcctatatgaggttttgtccacgacagaatttgcagcagtccttggacgcctta |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14707411 |
gaatccaattcaactcaagccgcaattcgtcaatccatttgtagcattctatatgaggttttgtccacgacagaatttgcagcagtccttggatgccttt |
14707312 |
T |
|
| Q |
107 |
cagtttaagtgccggaccaattagtgagtagagtagcagcatgtgcactcacagtagcaggcaccactacttcattataccaaatattgtagttccttta |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||| |
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| T |
14707311 |
cagtttaagtgccggaccaattagtgagtagagtagcagcatgtgcactcacagtagcaggcacctctacttcattataccaaattttgttgttccttta |
14707212 |
T |
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| Q |
207 |
tttcctgattaaaattctg |
225 |
Q |
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||| |||||||||| |||| |
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| T |
14707211 |
tttgctgattaaaactctg |
14707193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 42 - 270
Target Start/End: Original strand, 14653067 - 14653295
Alignment:
| Q |
42 |
catttgtagcatcctatatgaggttttgtccacgacagaatttgcagcagtccttggacgccttacagtttaagtgccggaccaattagtgagtagagta |
141 |
Q |
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|||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
14653067 |
catttgtagcgtcctagatgaggttttatccacgacagaatttgcagcagtccttggacgcattactgtttaagtgccggaccaattagtgagtagagta |
14653166 |
T |
|
| Q |
142 |
gcagcatgtgcactcacagtagcaggcaccactacttcattataccaaatattgtagttcctttatttcctgattaaaattctgcaacacacagacaaaa |
241 |
Q |
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||| ||||||||||||||||||||| || ||||||||||||||||||| |||| |||| |||| |||||||||||||||||||||| ||| |||| |
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| T |
14653167 |
gcaccatgtgcactcacagtagcagatgcctctacttcattataccaaattttgtttttccattatatcctgattaaaattctgcaacatgcaggaaaaa |
14653266 |
T |
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| Q |
242 |
aattctgctccagtccgagagtgtgaagt |
270 |
Q |
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| T |
14653267 |
atttctgttccagtccgagagtgtgaagt |
14653295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 42 - 270
Target Start/End: Original strand, 14662858 - 14663086
Alignment:
| Q |
42 |
catttgtagcatcctatatgaggttttgtccacgacagaatttgcagcagtccttggacgccttacagtttaagtgccggaccaattagtgagtagagta |
141 |
Q |
| |
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|||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
14662858 |
catttgtagcgtcctagatgaggttttatccacgacagaatttgcagcagtccttggacgcattactgtttaagtgccggaccaattagtgagtagagta |
14662957 |
T |
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| Q |
142 |
gcagcatgtgcactcacagtagcaggcaccactacttcattataccaaatattgtagttcctttatttcctgattaaaattctgcaacacacagacaaaa |
241 |
Q |
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||| ||||||||||||||||||||| || ||||||||||||||||||| |||| |||| |||| |||||||||||||||||||||| ||| |||| |
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| T |
14662958 |
gcaccatgtgcactcacagtagcagatgcctctacttcattataccaaattttgtttttccattatatcctgattaaaattctgcaacatgcaggaaaaa |
14663057 |
T |
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| Q |
242 |
aattctgctccagtccgagagtgtgaagt |
270 |
Q |
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| T |
14663058 |
atttctgttccagtccgagagtgtgaagt |
14663086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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