View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6812_low_12 (Length: 294)
Name: NF6812_low_12
Description: NF6812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6812_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 3 - 288
Target Start/End: Original strand, 28674783 - 28675068
Alignment:
| Q |
3 |
caagtgagtccctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcct |
102 |
Q |
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| T |
28674783 |
caagtgtgtccctccaatcagcagattggtcttggtaaagagtaaaattggagagataaacaacttttttggtgagatcacgggtgtagtactccttcct |
28674882 |
T |
|
| Q |
103 |
cgccttggcatcttgttggtgaaatctacaagttcctttgatcatctcatccaaaatttgtgttggaattccatgatttattacttgaaagaatccccat |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28674883 |
cgccttggcatcttgttggtgaaatctacaagttcctttgatcatctcatccaaaatatgtgttggaattccatgatttatcacttgaaagaatccccat |
28674982 |
T |
|
| Q |
203 |
ttctcacttgcattttgaacttttctcacaacttcatctctcaaaagaggatcatcgtggattcctgttaagtcaattgtagggat |
288 |
Q |
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| T |
28674983 |
ttctcacttgcattttgaacttttctcacaacttcatctctcaaaagaggatcatcgtggattcctgttaagtcaattgtagggat |
28675068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 3 - 287
Target Start/End: Original strand, 28670639 - 28670923
Alignment:
| Q |
3 |
caagtgagtccctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcct |
102 |
Q |
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|||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28670639 |
caagtgtgtccctccaatcagcagattggtctaggtagagagtaaaattggaaagataaacaacttttttggtaagatcacgggtgtagtactccttcct |
28670738 |
T |
|
| Q |
103 |
cgccttggcatcttgttggtgaaatctacaagttcctttgatcatctcatccaaaatttgtgttggaattccatgatttattacttgaaagaatccccat |
202 |
Q |
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| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28670739 |
caccttggcatcttgttggtgaaatctacaagttccattgatcatctcatccaaaatctgtgttggaattccatgatttattacttgaaagaatccccat |
28670838 |
T |
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| Q |
203 |
ttctcacttgcattttgaacttttctcacaacttcatctctcaaaagaggatcatcgtggattcctgttaagtcaattgtaggga |
287 |
Q |
| |
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||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
28670839 |
ttctcacttgcatttcgaacttttcttacaacttcatctctcaaaacaggatcatcatggattcctgttaagtcaattgtaggga |
28670923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 3 - 288
Target Start/End: Original strand, 28642056 - 28642341
Alignment:
| Q |
3 |
caagtgagtccctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcct |
102 |
Q |
| |
|
|||||| ||||||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
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| T |
28642056 |
caagtgtgtccctccactcagcagattgatcttcggaaagagtaaaattggaaagataaacaacttttttagtgagatcacgggtgtaatactctttcct |
28642155 |
T |
|
| Q |
103 |
cgccttggcatcttgttggtgaaatctacaagttcctttgatcatctcatccaaaatttgtgttggaattccatgatttattacttgaaagaatccccat |
202 |
Q |
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| |||| | ||| ||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
28642156 |
caccttaggatcctgttgatgaaatctacaagttcctttgatcatctcatccaaaacatgaactggaattccatgatttattacttgaaagaatccccat |
28642255 |
T |
|
| Q |
203 |
ttctcacttgcattttgaacttttctcacaacttcatctctcaaaagaggatcatcgtggattcctgttaagtcaattgtagggat |
288 |
Q |
| |
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||||||| |||||||| || || |||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||| |
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| T |
28642256 |
ttctcacatgcattttcaagttgtctcacaacttcatctctcaaagcaggatcatcatggattccttttaagtcaattgtagggat |
28642341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 3 - 288
Target Start/End: Original strand, 28650917 - 28651202
Alignment:
| Q |
3 |
caagtgagtccctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcct |
102 |
Q |
| |
|
|||||| ||||||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
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| T |
28650917 |
caagtgtgtccctccactcagcagattgatcttcggaaagagtaaaattggaaagataaacaacttttttagtgagatcacgggtgtaatactctttcct |
28651016 |
T |
|
| Q |
103 |
cgccttggcatcttgttggtgaaatctacaagttcctttgatcatctcatccaaaatttgtgttggaattccatgatttattacttgaaagaatccccat |
202 |
Q |
| |
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| |||| | ||| ||||| ||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
28651017 |
caccttaggatcctgttgatgaaatctacaagttcctttgatcatctcatgcaaaacatgaactggaattccatgatttattacttgaaagaatccccat |
28651116 |
T |
|
| Q |
203 |
ttctcacttgcattttgaacttttctcacaacttcatctctcaaaagaggatcatcgtggattcctgttaagtcaattgtagggat |
288 |
Q |
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|
||||||| |||||||| || || |||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||| |
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| T |
28651117 |
ttctcacatgcattttcaagttgtctcacaacttcatctctcaaagcaggatcatcatggattccttttaagtcaattgtagggat |
28651202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 3 - 281
Target Start/End: Original strand, 28696144 - 28696422
Alignment:
| Q |
3 |
caagtgagtccctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcct |
102 |
Q |
| |
|
|||||||||||||||||| ||||| | || ||||||||| || |||| |||| |||||||||||| ||| || |||| | || || ||||| || || |
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| T |
28696144 |
caagtgagtccctccaattagcagcaggatcatggtaaagactataattagaaacataaacaactttcttgttgggatcgcatgtataatactcttttct |
28696243 |
T |
|
| Q |
103 |
cgccttggcatcttgttggtgaaatctacaagttcctttgatcatctcatccaaaatttgtgttggaattccatgatttattacttgaaagaatccccat |
202 |
Q |
| |
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| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28696244 |
caccttggcatcttgttgatgaaatctacaagttcctttgatcatctcatccaaaatttgtgttggaattccatgatttattacttgaaagaatccccaa |
28696343 |
T |
|
| Q |
203 |
ttctcacttgcattttgaacttttctcacaacttcatctctcaaaagaggatcatcgtggattcctgttaagtcaattg |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| | |||||| ||||||||||||| |||||||| |
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| T |
28696344 |
ttctcacttgcattttgaacttttctcacaacttcatctttcaaaacaagatcattatggattcctgttaggtcaattg |
28696422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 3 - 288
Target Start/End: Original strand, 28691259 - 28691544
Alignment:
| Q |
3 |
caagtgagtccctccaatcagcagattggtcttggtaaagagtaaaattggaaagataaacaacttttttggtgagatcacgggtgtagtactccttcct |
102 |
Q |
| |
|
|||||||||||||||||| ||||| | || ||||||||| || |||| |||| ||||||||||| ||| | ||||||| ||||| ||||| ||||| |
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| T |
28691259 |
caagtgagtccctccaattagcagcaggatcatggtaaagactataattagaaacgtaaacaactttcttgttaggatcacgtgtgtaatactctttcct |
28691358 |
T |
|
| Q |
103 |
cgccttggcatcttgttggtgaaatctacaagttcctttgatcatctcatccaaaatttgtgttggaattccatgatttattacttgaaagaatccccat |
202 |
Q |
| |
|
|| | |||||||||| ||||||||||||||||||||||||||||||||||||| || | || ||||||||||||||||||||||||||||||||| |
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| T |
28691359 |
taccataacatcttgttgatgaaatctacaagttcctttgatcatctcatccaaaacatgagctgaaattccatgatttattacttgaaagaatccccac |
28691458 |
T |
|
| Q |
203 |
ttctcacttgcattttgaacttttctcacaacttcatctctcaaaagaggatcatcgtggattcctgttaagtcaattgtagggat |
288 |
Q |
| |
|
||||||| |||||||| ||||||||||||| ||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
28691459 |
ttctcacatgcattttcaacttttctcacagcttcatctctcaaaacaagatcatcatggattcctgttaggtcaattgtagggat |
28691544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 111 - 268
Target Start/End: Original strand, 28717570 - 28717733
Alignment:
| Q |
111 |
catcttgttggtgaaatctacaagttcctttgatcatctcatccaaaatttgtgttggaattccatgatttattacttg------aaagaatccccattt |
204 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||| ||| || || || |
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|
| T |
28717570 |
catcttgttgatgaaatctacaagttcctttgatcatctcatccaaaacatgagttgaaattccatgatttattacttgaaaaaaaaaaaaaaacctctt |
28717669 |
T |
|
| Q |
205 |
ctcacttgcattttgaacttttctcacaacttcatctctcaaaagaggatcatcgtggattcct |
268 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| |||||||||| |||| |||| ||||||||| |
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|
| T |
28717670 |
ctcaaatgcattttgaacctttctcacaactttgtctctcaaaacaggaccatcatggattcct |
28717733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 28741514 - 28741591
Alignment:
| Q |
203 |
ttctcacttgcattttgaacttttctcacaacttcatctctcaaaagaggatcatcgtggattcctgttaagtcaatt |
280 |
Q |
| |
|
||||||| || |||||||||||||||||||||| ||||||||||| | ||||||| |||||||||| ||| |||||| |
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| T |
28741514 |
ttctcacatgaattttgaacttttctcacaactgtatctctcaaaacaagatcatcatggattcctggtaaatcaatt |
28741591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 206
Target Start/End: Complemental strand, 41238565 - 41238469
Alignment:
| Q |
110 |
gcatcttgttggtgaaatctacaagttcctttgatcatctcatccaaaatttgtgttggaattccatgatttattacttgaaagaatccccatttct |
206 |
Q |
| |
|
|||||||||| |||||||||||| |||| ||||||||||||||||||| || |||||| |||||||| || ||||| || |||||||| |||| |
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| T |
41238565 |
gcatcttgttcatgaaatctacaaattccattgatcatctcatccaaaacatgaagtggaataccatgattgatcacttggaaaaatccccagttct |
41238469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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