View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6812_low_13 (Length: 292)

Name: NF6812_low_13
Description: NF6812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6812_low_13
NF6812_low_13
[»] chr1 (1 HSPs)
chr1 (1-292)||(2747009-2747294)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 2747294 - 2747009
Alignment:
Q  1 acttcacccaaaccaaactaacaaca---caaaaacacactttctctcttttgcaacttcacttcttcatatctctgaaacatccttcaattcaacacta 97  Q
    |||||||||||||||||| |||||||   ||||||||||||||||||||||||||||||||        ||||||| |||||||||||||     |||||    
T  2747294 acttcacccaaaccaaaccaacaacaacacaaaaacacactttctctcttttgcaacttca--------tatctctcaaacatccttcaa-----cacta 2747208  T
Q  98 taatagctacctagtaccttgttctctaacacacagaca----cacttgttttgtttcttttgttaagttttatggcttaccaaaaccaacatctttcac 193  Q
    |||||||||||||||||| |||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2747207 taatagctacctagtaccctgttctctaacacacaaacatacacacttgttttgtttcttttgttaagttttatggcttaccaaaaccaacatctttcac 2747108  T
Q  194 aagagttaccaatccaacatttcacagaccaaaccaacaacaataacaacaactcattccgttccatattaccagactcacccgaccctaacaccaaac 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2747107 aagagttaccaatccaacatttcacagaccaaaccaacaacaataataacaactcattccgttccatattaccagactcacccgaccctaactccaaac 2747009  T

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