View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6812_low_25 (Length: 218)
Name: NF6812_low_25
Description: NF6812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6812_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 45273749 - 45273570
Alignment:
| Q |
19 |
atcacaacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcag |
118 |
Q |
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| T |
45273749 |
atcacaacacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcag |
45273650 |
T |
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| Q |
119 |
ggccgaggctaccaaattcaccgctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttc |
198 |
Q |
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| T |
45273649 |
ggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttc |
45273570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 45281993 - 45281814
Alignment:
| Q |
19 |
atcacaacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcag |
118 |
Q |
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| T |
45281993 |
atcacaacacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcag |
45281894 |
T |
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| Q |
119 |
ggccgaggctaccaaattcaccgctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttc |
198 |
Q |
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| T |
45281893 |
ggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttc |
45281814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 45293328 - 45293155
Alignment:
| Q |
24 |
aacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccg |
123 |
Q |
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| T |
45293328 |
aacacatgttactatgcagagtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccg |
45293229 |
T |
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| Q |
124 |
aggctaccaaattcaccgctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtctt |
197 |
Q |
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| T |
45293228 |
aggctaccaaattcactgctggtttatggctccaagctggacccaagtccgcagccgaatggttgactggtctt |
45293155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 45302288 - 45302115
Alignment:
| Q |
24 |
aacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccg |
123 |
Q |
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| T |
45302288 |
aacacatgttactatgcagagtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccg |
45302189 |
T |
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| Q |
124 |
aggctaccaaattcaccgctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtctt |
197 |
Q |
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| T |
45302188 |
aggctaccaaattcactgctggtttatggctccaagctggacccaagtccgcagccgaatggttgactggtctt |
45302115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 45270194 - 45270042
Alignment:
| Q |
24 |
aacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccg |
123 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | ||||||||||||||| || |
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| T |
45270194 |
aacacgtgttactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcg |
45270095 |
T |
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| Q |
124 |
aggctaccaaattcaccgctggtatatggctccaagctggacccaagtctgca |
176 |
Q |
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|||||||||||| |||||| ||||||||||| | |||||||| ||| ||||| |
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| T |
45270094 |
aggctaccaaatacaccgccagtatatggctcgatgctggaccgaagactgca |
45270042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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