View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6812_low_27 (Length: 211)
Name: NF6812_low_27
Description: NF6812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6812_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 22933018 - 22933197
Alignment:
| Q |
16 |
ggtgttgcaaagatagagaaaaatggaataataagattaacaaatgattcaagcaaattaatgggccatgctttttactctcaaccttttcagctaaaga |
115 |
Q |
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| T |
22933018 |
ggtgttgcaaagatagagaaaaatggaataataagattaacaaatgattcaagcaaattaatgggccatgctttttactctcaaccttttcagctaaaga |
22933117 |
T |
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| Q |
116 |
actcaacaactggtaaagctttttccttttcatcaacctttgccattgctgttgttcctgagtatcctagagttggtggt |
195 |
Q |
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| T |
22933118 |
actcaacaactggtaaagctttttccttttcatcaacctttgctattgctgttgttcctgagtatcctagagttggtggt |
22933197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 26 - 194
Target Start/End: Complemental strand, 22922560 - 22922392
Alignment:
| Q |
26 |
agatagagaaaaatggaataataagattaacaaatgattcaagcaaattaatgggccatgctttttactctcaaccttttcagctaaagaactcaacaac |
125 |
Q |
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| T |
22922560 |
agatagaaaaaaatggtataataagattaacaaatgaaacaagtagattattgggtcatgctttttatcctcaaccatttcagataaagaacaaaactac |
22922461 |
T |
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| Q |
126 |
tggtaaagctttttccttttcatcaacctttgccattgctgttgttcctgagtatcctagagttggtgg |
194 |
Q |
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| T |
22922460 |
tggtaaagttttctctttctcatcatcttttgcacttgcttgtgttcctgaatatcctaaacttggtgg |
22922392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 15628655 - 15628486
Alignment:
| Q |
15 |
tggtgttgcaaagatagagaaaaatggaataataagattaacaaatgattcaagcaaattaatgggccatgctttttactctcaaccttttcagctaaag |
114 |
Q |
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| T |
15628655 |
tggttttgcagagatagagaaaaatgggatgataagattaacaaatcacacaaacaatgaaatgggccatgctttttactcattaccttttcagctaagg |
15628556 |
T |
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| Q |
115 |
aactcaacaactggtaaagctttttccttttcatcaacctttgccattgctgttgttcctgagtatccta |
184 |
Q |
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| T |
15628555 |
aactcgacaactcgtaaagcttactcattttcttcatcttttgctcttgctgttgtccctgagtatccta |
15628486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 24382732 - 24382666
Alignment:
| Q |
26 |
agatagagaaaaatggaataataagattaacaaatgattcaagcaaattaatgggccatgcttttta |
92 |
Q |
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| T |
24382732 |
agatagagaaaaatggtataataagattaacaaatgaaacaagtagattaatggttcatgcttttta |
24382666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 36386047 - 36386113
Alignment:
| Q |
26 |
agatagagaaaaatggaataataagattaacaaatgattcaagcaaattaatgggccatgcttttta |
92 |
Q |
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| T |
36386047 |
agatagagaaaaatggtataataagattaacaaatgaaacaagtagattaatggttcatgcttttta |
36386113 |
T |
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