View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6812_low_3 (Length: 480)
Name: NF6812_low_3
Description: NF6812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6812_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 5e-57; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 236 - 356
Target Start/End: Original strand, 25536889 - 25537009
Alignment:
| Q |
236 |
atcattcaaacaaatttacttaaaaagattcgaagaattcccacaaaagattaccttacctcaaaacattcccacaaattcaatcatactcttttaagac |
335 |
Q |
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| T |
25536889 |
atcattcaaacaaatttacttaaaaagatttgaagaatttccacaaaagattaccttacctcaaaacattcccacaaattcaatcatactcttttaagac |
25536988 |
T |
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| Q |
336 |
tttctcatactctcaaaagac |
356 |
Q |
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| T |
25536989 |
tttctcatactctcaaaagac |
25537009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 25536675 - 25536816
Alignment:
| Q |
19 |
aatatacttttaatcttgtttgtcaaaaatattttatcataatatatgtcaaaagatggtattgttaacattcctcctgtatacaataaagcgtagtgga |
118 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | ||||||||||||||||| || |
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| T |
25536675 |
aatatacttttaatcttatttgtcaaaaatattttatcataatatatgccaaaagatggtattgttagcattccttccgtatacaataaagcgtaatgag |
25536774 |
T |
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| Q |
119 |
aaaagcggatagatgaacacgttagtaatcgctttttcgtta |
160 |
Q |
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| T |
25536775 |
aaaagcggatagatgaacacgttagtactcgtttttccgtta |
25536816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 413 - 472
Target Start/End: Original strand, 25537075 - 25537134
Alignment:
| Q |
413 |
agagtgtacatatatgcctaagcaataccacttctgaaaatcgatttcatgactctcaaa |
472 |
Q |
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| T |
25537075 |
agagtgtacatatatgcctaagcaataccacttctgaaaatcgatttcatgactctcaaa |
25537134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 5823264 - 5823310
Alignment:
| Q |
26 |
ttttaatcttgtttgtcaaaaatattttatcataatatatgtcaaaa |
72 |
Q |
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| T |
5823264 |
ttttaatcttatttgacaataatattttatcataatatatgccaaaa |
5823310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 45064054 - 45064100
Alignment:
| Q |
26 |
ttttaatcttgtttgtcaaaaatattttatcataatatatgtcaaaa |
72 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| ||||| |
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| T |
45064054 |
ttttaatcatatttgtcaaaaatattttatcataatatatgccaaaa |
45064100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 32526981 - 32527027
Alignment:
| Q |
26 |
ttttaatcttgtttgtcaaaaatattttatcataatatatgtcaaaa |
72 |
Q |
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|||||||||| ||||||||||| |||| |||||| |||||||||||| |
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| T |
32526981 |
ttttaatcttatttgtcaaaaacatttaatcatagtatatgtcaaaa |
32527027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 36821542 - 36821587
Alignment:
| Q |
27 |
tttaatcttgtttgtcaaaaatattttatcataatatatgtcaaaa |
72 |
Q |
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||||||||| ||| |||||||||||| |||||| |||||||||||| |
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| T |
36821542 |
tttaatcttatttctcaaaaatatttaatcatagtatatgtcaaaa |
36821587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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