View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6812_low_5 (Length: 420)
Name: NF6812_low_5
Description: NF6812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6812_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 25743112 - 25742870
Alignment:
| Q |
1 |
ggaaagcattggttgtctgtacaatttggaaactttgaaactagttggatgtactaacctacaagaacttcctaaagattttcataggttagttaacctg |
100 |
Q |
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| T |
25743112 |
ggaaagcatcggttgtctgtacaatttggaaactttgaagctagttggatgtactaacctacaa-----tcctaaagattttcataggttagttaacctg |
25743018 |
T |
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| Q |
101 |
cgttacttagatattacttgtacgagtttgaaatggatgccattgcatttatgtgcattgacaaacctacaaaaactaagtgactttttcataggaaaag |
200 |
Q |
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| T |
25743017 |
cgttacttagatattacttgtacgagtttgaaatggatgccattgcatttatgtgcattgacaaacctacaaaaactaagtgactttttcataggaaaag |
25742918 |
T |
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| Q |
201 |
aatatggatcttccattgatgaactaggagaattatctgatttacatg |
248 |
Q |
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| T |
25742917 |
aatatggatcttccattgatgaaataggagaattatctgatttacatg |
25742870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 271 - 399
Target Start/End: Complemental strand, 25742871 - 25742743
Alignment:
| Q |
271 |
tgaacattttagctatgtggattcagaaaaggccaagttgaatgaaaaggaacttcttgaaaagttacttttggaatggagtgagaatgctgatactgac |
370 |
Q |
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| T |
25742871 |
tgaacatgttagctatgtggattcagaaaaggccaagttgaatgaaaaggaacttcttgaaaagttaattttggaatggggtgagaatgctgatactgac |
25742772 |
T |
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| Q |
371 |
aattcacaacaagaaaaagacatactaga |
399 |
Q |
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| T |
25742771 |
aattcacaacaagaaaaagacatactaga |
25742743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 264
Target Start/End: Original strand, 18086522 - 18086660
Alignment:
| Q |
126 |
gtttgaaatggatgccattgcatttatgtgcattgacaaacctacaaaaactaagtgactttttcataggaaaagaatatggatcttccattgatgaact |
225 |
Q |
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| T |
18086522 |
gtttgaagtggatgccattgcaaatcagtgaattgaaaaaccttcaaaagttgagtgacttttttgttggtgaagatcatggatcttccattagtgaact |
18086621 |
T |
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| Q |
226 |
aggagaattatctgatttacatggatcactgttcattca |
264 |
Q |
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| T |
18086622 |
gggagagctatgtaatttacatggatcattgttcattca |
18086660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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