View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6812_low_7 (Length: 395)
Name: NF6812_low_7
Description: NF6812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6812_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 145 - 376
Target Start/End: Original strand, 11443348 - 11443581
Alignment:
| Q |
145 |
tcctcaaactacatcatgaatgaccttagaaacaagttccaatcacttatcaaccgctactcgcaccaaaacccctccaaaaaaccatcaaataaaccaa |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11443348 |
tcctcaaactacatcatgaatgaccttagaaacaagttccaatcacttatcaaccgctactcgcaccaaaacccctccaaaaaaccatcaaataaaccaa |
11443447 |
T |
|
| Q |
245 |
actcctatataacatcaccttaccttatattcgcacaactgagcgcaaataaacactcgaaaatcaattat--atgcacttattcatatttgatcatcaa |
342 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11443448 |
actactatataacatcaccttaccttatattcgcacaactgagcgcaaataaacactcgaaaatcaattatccatgcacttattcatatttgatcatcaa |
11443547 |
T |
|
| Q |
343 |
gcaacacccgatccattggatcaaataccataac |
376 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
11443548 |
gcaacacccgatccattggatcaaataccataac |
11443581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 145 - 376
Target Start/End: Complemental strand, 11549965 - 11549732
Alignment:
| Q |
145 |
tcctcaaactacatcatgaatgaccttagaaacaagttccaatcacttatcaaccgctactcgcaccaaaacccctccaaaaaaccatcaaataaaccaa |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11549965 |
tcctcaaactacatcatgaatgaccttagaaacaagtttcaatcacctatcaactgctactcgcaccaaaacccctccaaaaaaccatcaaataaaccaa |
11549866 |
T |
|
| Q |
245 |
actcctatataacatcaccttaccttatattcgcacaactgagcgcaaataaacactcgaaaatcaatta--tatgcacttattcatatttgatcatcaa |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
11549865 |
actcctatataacatcaccttaccttatattcgcacaactgagcccaaataaacacccgaaaatcaattaaccctgcacttattcatatttgatcatcaa |
11549766 |
T |
|
| Q |
343 |
gcaacacccgatccattggatcaaataccataac |
376 |
Q |
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||||||||||||||||||| |||||||||||| |
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|
| T |
11549765 |
tcaacacccgatccattggagaaaataccataac |
11549732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 307
Target Start/End: Original strand, 11438939 - 11439097
Alignment:
| Q |
148 |
tcaaactacatcatgaatgaccttagaaacaagttccaatcacttatcaaccgctactcgcaccaaaacccctccaaaaaaccatcaaataaaccaaact |
247 |
Q |
| |
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||||||||||| |||||||||| | ||||||||||||| || || | ||||||||||||| ||||||| | ||||||||||| ||| ||||||| |
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| T |
11438939 |
tcaaactacattgtgaatgacctcaaaaacaagttccaaacaactaccgtccgctactcgcactaaaaccctttcaaaaaaccataaaactgaccaaaca |
11439038 |
T |
|
| Q |
248 |
cctatataacatcaccttaccttatattcgcacaactgagcgcaaataaacactcgaaaa |
307 |
Q |
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|||||| | |||||||||||||||| ||| || || |||| ||||||||||| |||||| |
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|
| T |
11439039 |
cctata-accatcaccttaccttatcttcccataattgagaccaaataaacacccgaaaa |
11439097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 11550091 - 11550051
Alignment:
| Q |
19 |
acatcaaaaaccccaataaagacaccacccaactgagggct |
59 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11550091 |
acatcaaaaacccgaataaagacaccacccaactgagggct |
11550051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 25859259 - 25859226
Alignment:
| Q |
201 |
ctactcgcaccaaaacccctccaaaaaaccatca |
234 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
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|
| T |
25859259 |
ctactcgcaccaaaacccctccaagaaaccatca |
25859226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 27712874 - 27712785
Alignment:
| Q |
145 |
tcctcaaactacatcatgaatgaccttagaaacaagttccaatcacttatcaaccgctactcgcaccaaaacccctccaaaaaaccatcaaa |
236 |
Q |
| |
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||||||||||||||| ||||| || |||||||||||| || ||| |||| | |||||||||| |||| |||||| ||||||||||||| |
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| T |
27712874 |
tcctcaaactacatcgcaaatgatctcagaaacaagttcgaaacacctatcgtctgctactcgcaacaaa--ccctcccaaaaaccatcaaa |
27712785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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