View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6814_high_1 (Length: 574)

Name: NF6814_high_1
Description: NF6814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6814_high_1
NF6814_high_1
[»] chr8 (14 HSPs)
chr8 (19-558)||(5947467-5948006)
chr8 (58-558)||(5983119-5983607)
chr8 (193-558)||(5958706-5959089)
chr8 (274-432)||(5920127-5920285)
chr8 (55-167)||(5958598-5958707)
chr8 (258-367)||(5886348-5886466)
chr8 (55-226)||(5919953-5920121)
chr8 (258-367)||(5842026-5842141)
chr8 (258-367)||(5848736-5848851)
chr8 (505-555)||(5920367-5920417)
chr8 (235-314)||(5841583-5841662)
chr8 (235-314)||(5847737-5847816)
chr8 (235-314)||(5848293-5848372)
chr8 (247-316)||(5885914-5885983)


Alignment Details
Target: chr8 (Bit Score: 504; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 19 - 558
Target Start/End: Original strand, 5947467 - 5948006
Alignment:
Q  19 aaaaatacattacatatataatcaaatgcatagaaataattaagactcccatcctaaaggaataataggatttgtgacaaattggctgcttgaggatggc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5947467 aaaaatacattacatatataatcaaatgcatagaaataattaagactcccatcctaaaggaataataggatttgtgacaaattggctgcttgaggatggc 5947566  T
Q  119 aatgatgatgacatacacatgagagcatcaatattgtaatccaatggattagcttccacattttgatcttgtgaatgaataataccagacgagtagcact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5947567 aatgatgatgacatacacatgagagcatcaatattgtaatccaatggattagcttccacattttgatcttgtgaatgaataataccagacgagtagcact 5947666  T
Q  219 gaattttctgacgagtttcatgttcttgggaattagatgaatctaggatgctagaagcataatcctcaaggctttgataattgactaattcaggcacagt 318  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||    
T  5947667 gaatttcctgaggagtttcatgttcttgggaattagatgaatctaggatgctagaagcgtaatcctcaaggctttgatgattggctaattcaggcacagt 5947766  T
Q  319 agcatcaagttcaaccaaatcatgatattgatcatattgttgcattaattcaattgggttcattaatttgttaagtggggtcgtatcactttttgaaaat 418  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5947767 agcatcaagttcaaccaaatcatgatattgatcatattgttgaattaattcaattgggttcattaatttgttaagtggggtcgtatcactttttaaaaat 5947866  T
Q  419 tgattttcttgattaactgggttgagatgaagggctacaccgttttcatatggaaaaggatcagatattggttgtactatattttgtggtattggatttt 518  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5947867 tgattttcttgattaactgggttgagatgaagggctacaccgtcttcatatggaaaaggatcagatattggttgtactatattttgtggtattggatttt 5947966  T
Q  519 gaatgtgagggaaattggcattataatggtcattgatgtc 558  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  5947967 gaatgagagggaaattggcattataatggtcattgatgtc 5948006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 58 - 558
Target Start/End: Original strand, 5983119 - 5983607
Alignment:
Q  58 ttaagactcccatcctaaaggaataataggatttgtgacaaattggctgcttgaggatggcaatgatgatgacatacacatgagagcatcaatattgtaa 157  Q
    ||||||||||||||||||||||||||||||||| ||||| |  |||||||||||||||| |||||||||   ||| ||||||||||||||||||||||||    
T  5983119 ttaagactcccatcctaaaggaataataggattagtgactatgtggctgcttgaggatgacaatgatga---catgcacatgagagcatcaatattgtaa 5983215  T
Q  158 tccaatggattagcttccacattttgatcttgtgaatgaataataccagacgagtagcactgaattttctgacgagtttcatgttcttgggaattagatg 257  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||||||||||||||||    ||| |||||||||||| ||||||||||    
T  5983216 tccaatggattagcttccacattttgatcttgtggatgaataagaccatacgtgtagcactgaattttcgctggagcttcatgttcttgcgaattagatg 5983315  T
Q  258 aatctaggatgctagaagcataatcctcaaggctttgataattgactaattcaggcacagtagcatcaagttcaaccaaatcatgatattgatcatattg 357  Q
    ||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5983316 aatctaggatgttacaagcataatcctcaaggctttgatgattgactaattcaggcatagtagcatcaagttcaaccaaatcatgatattgatcatattg 5983415  T
Q  358 ttgcattaattcaattgggttcattaatttgttaagtggggtcgtatcactttttgaaaattgattttcttgattaactgggttgagatgaagggctaca 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         | |||||||||||||||||||||||||||||||    
T  5983416 ttgcattaattcaattgggttcattaatttgttaagtggggtcgtatcactttttgaa---------tattgattaactgggttgagatgaagggctaca 5983506  T
Q  458 ccgttttcatatggaaaaggatcagatattggttgtactatattttgtggtattggattttgaatgtgagggaaattggcattataatggtcattgatgt 557  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5983507 ccgtcttcatatggaaaaggatcagatattggttgtactatattttgtggtattggattttgaatgtgagggaaattggcattataatggtcattgatgt 5983606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 193 - 558
Target Start/End: Original strand, 5958706 - 5959089
Alignment:
Q  193 atgaataataccagacga---gtagcactgaattttctgacgagtttcatgttcttgggaattagatgaatctaggatgctagaagcataatcctcaagg 289  Q
    |||||||||||||||||    ||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5958706 atgaataataccagacgtactgtagcactgaattttcgcaggagcttcatgttcttgggaattagatgaatctaggatgctacaagcataatcctcaagg 5958805  T
Q  290 ctttgataattgactaattcaggcacagtagcatcaagttcaaccaaatcatgatattgatcatattgttgcattaattcaattgggttcattaatttgt 389  Q
    ||||||| |||  ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5958806 ctttgatgattttctaattcaggcacagtttcatcaagttcaaccaaatcatgatattgatcatattgttgcattaattcaattgggttcattaatttgt 5958905  T
Q  390 taagtggggtcgtatcactttttgaaaattgattttcttgattaactgggttgagatgaagggctacaccg---------------ttttcatatggaaa 474  Q
    |||| |||||||| ||||||||||||||||||||||||||||| | |||||| |||||||| ||||||| |               | |||||| | | |    
T  5958906 taagcggggtcgtgtcactttttgaaaattgattttcttgatttagtgggttaagatgaagagctacactgtctattgaccatgtatcttcataagtaga 5959005  T
Q  475 aggatcagatattggttgtactatattttgtggtattggattttgaatgtgagggaaattggcattataatggtcattgatgtc 558  Q
    | ||| ||||||||||||||| ||||||||||  || ||||||||||||||| |||||||||||||||||||||||||||||||    
T  5959006 aagattagatattggttgtacaatattttgtgccatcggattttgaatgtgaaggaaattggcattataatggtcattgatgtc 5959089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 274 - 432
Target Start/End: Original strand, 5920127 - 5920285
Alignment:
Q  274 agcataatcctcaaggctttgataattgactaattcaggcacagtagcatcaagttcaaccaaatcatgatattgatcatattgttgcattaattcaatt 373  Q
    ||||||||||||||||||||||| ||||||||||| ||||| ||| || ||||||||||||||||||||| ||||| ||||||||| |||||||||||||    
T  5920127 agcataatcctcaaggctttgatcattgactaatttaggcagagtggcttcaagttcaaccaaatcatgacattgaacatattgttccattaattcaatt 5920226  T
Q  374 gggttcattaatttgttaagtggggtcgtatcactttttgaaaattgattttcttgatt 432  Q
    ||||| |||| |||||| |||||||| |||||||||||||| | |||||||||||||||    
T  5920227 gggttgattattttgttgagtggggtggtatcactttttgagatttgattttcttgatt 5920285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 55 - 167
Target Start/End: Original strand, 5958598 - 5958707
Alignment:
Q  55 taattaagactcccatcctaaaggaataataggatttgtgacaaattggctgcttgaggatggcaatgatgatgacatacacatgagagcatcaatattg 154  Q
    ||||||||||||||||||||||||||| |||||||||||||| | ||||||| |||| |||||||   |||||||||||||||||| |||||||||||||    
T  5958598 taattaagactcccatcctaaaggaattataggatttgtgactatttggctgattgatgatggca---atgatgacatacacatgaaagcatcaatattg 5958694  T
Q  155 taatccaatggat 167  Q
    |||||||||||||    
T  5958695 taatccaatggat 5958707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 258 - 367
Target Start/End: Original strand, 5886348 - 5886466
Alignment:
Q  258 aatctaggatgctagaagcataatcctcaaggctttgataattgactaattcaggcacagtagcatcaagttcaaccaa---------atcatgatattg 348  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||   || ||||||| ||||||         ||||||||||||    
T  5886348 aatctaggatgctacaagcataatcctcaaggctttgatcattgactaatttaggcacaagggcttcaagtttaaccaaattatgatcatcatgatattg 5886447  T
Q  349 atcatattgttgcattaat 367  Q
    |||||||||||||||||||    
T  5886448 atcatattgttgcattaat 5886466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 226
Target Start/End: Original strand, 5919953 - 5920121
Alignment:
Q  55 taattaagactcccatcctaaaggaataataggatttgtgacaaattggctgcttgaggatggcaatgatgatgacatacacatgagagcatcaatattg 154  Q
    |||||||| |||||||||||| |||||| |||||||| |||| | ||||||||||||||| | ||    |||||||||| | ||||| |||||| || ||    
T  5919953 taattaaggctcccatcctaatggaatagtaggatttttgactacttggctgcttgaggaggaca---ctgatgacataaatatgagggcatcattaatg 5920049  T
Q  155 taatccaatggattagcttccacattttgatcttgtgaatgaataataccagacgagtagcactgaattttc 226  Q
    |||  |||| ||||| |||||| |||||||||||||| || | |||||| ||  | ||||| ||||||||||    
T  5920050 taaatcaattgattatcttccatattttgatcttgtggataagtaatactagtggtgtagctctgaattttc 5920121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 367
Target Start/End: Original strand, 5842026 - 5842141
Alignment:
Q  258 aatctaggatgctagaagcataatcctcaaggctttgataattgactaattcaggcacagtagcatcaagttcaaccaa------atcatgatattgatc 351  Q
    |||||||||||||| | |||||||  ||||||||||||| ||||| ||||| ||||||| | || ||| ||||||||||      |||||||||||||||    
T  5842026 aatctaggatgctacatgcataattttcaaggctttgatcattgagtaatttaggcacaatggcttcatgttcaaccaagttatgatcatgatattgatc 5842125  T
Q  352 atattgttgcattaat 367  Q
    |||||| |||||||||    
T  5842126 atattgctgcattaat 5842141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 367
Target Start/End: Original strand, 5848736 - 5848851
Alignment:
Q  258 aatctaggatgctagaagcataatcctcaaggctttgataattgactaattcaggcacagtagcatcaagttcaaccaa------atcatgatattgatc 351  Q
    |||||||||||||| | |||||||  ||||||||||||| ||||| ||||| ||||||| | || ||| ||||||||||      |||||||||||||||    
T  5848736 aatctaggatgctacatgcataattttcaaggctttgatcattgagtaatttaggcacaatggcttcatgttcaaccaagttatgatcatgatattgatc 5848835  T
Q  352 atattgttgcattaat 367  Q
    |||||| |||||||||    
T  5848836 atattgctgcattaat 5848851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 505 - 555
Target Start/End: Original strand, 5920367 - 5920417
Alignment:
Q  505 tggtattggattttgaatgtgagggaaattggcattataatggtcattgat 555  Q
    |||||||||||||||||||||| |||||||| |||||||||||| ||||||    
T  5920367 tggtattggattttgaatgtgaaggaaattgccattataatggttattgat 5920417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 314
Target Start/End: Original strand, 5841583 - 5841662
Alignment:
Q  235 ttcatgttcttgggaattagatgaatctaggatgctagaagcataatcctcaaggctttgataattgactaattcaggca 314  Q
    ||||||||| | ||||| | ||||||||||||||| | || |||  |||||||||||||||| ||||||||||| |||||    
T  5841583 ttcatgttccttggaatcaaatgaatctaggatgcaacaatcatggtcctcaaggctttgatcattgactaattgaggca 5841662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 314
Target Start/End: Original strand, 5847737 - 5847816
Alignment:
Q  235 ttcatgttcttgggaattagatgaatctaggatgctagaagcataatcctcaaggctttgataattgactaattcaggca 314  Q
    ||||||||| | ||||| | ||||||||||||||| | || |||  |||||||||||||||| ||||||||||| |||||    
T  5847737 ttcatgttccttggaatcaaatgaatctaggatgcaacaatcatggtcctcaaggctttgatcattgactaattgaggca 5847816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 314
Target Start/End: Original strand, 5848293 - 5848372
Alignment:
Q  235 ttcatgttcttgggaattagatgaatctaggatgctagaagcataatcctcaaggctttgataattgactaattcaggca 314  Q
    ||||||||| | ||||| | ||||||||||||||| | || |||  |||||||||||||||| ||||||||||| |||||    
T  5848293 ttcatgttccttggaatcaaatgaatctaggatgcaacaatcatggtcctcaaggctttgatcattgactaattgaggca 5848372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 5885914 - 5885983
Alignment:
Q  247 ggaattagatgaatctaggatgctagaagcataatcctcaaggctttgataattgactaattcaggcaca 316  Q
    ||||| ||||||||| ||||||| | || |||  |||||||||||||||| ||||||||||| |||||||    
T  5885914 ggaatcagatgaatccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggcaca 5885983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University