View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6814_high_2 (Length: 504)

Name: NF6814_high_2
Description: NF6814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6814_high_2
NF6814_high_2
[»] chr7 (7 HSPs)
chr7 (20-271)||(8028446-8028697)
chr7 (71-251)||(13949263-13949443)
chr7 (286-423)||(8029418-8029555)
chr7 (251-423)||(13948999-13949167)
chr7 (421-491)||(8029601-8029671)
chr7 (331-420)||(35346184-35346272)
chr7 (421-503)||(13948886-13948969)
[»] chr1 (3 HSPs)
chr1 (71-254)||(35163700-35163883)
chr1 (331-420)||(4010576-4010665)
chr1 (251-291)||(35163567-35163607)
[»] chr5 (4 HSPs)
chr5 (70-254)||(30904012-30904196)
chr5 (256-421)||(30904295-30904456)
chr5 (331-420)||(39344732-39344820)
chr5 (421-477)||(30904483-30904540)
[»] chr8 (5 HSPs)
chr8 (71-242)||(1601502-1601672)
chr8 (251-423)||(1603031-1603199)
chr8 (71-192)||(1661170-1661291)
chr8 (422-503)||(1603230-1603312)
chr8 (259-291)||(1661411-1661443)
[»] chr2 (2 HSPs)
chr2 (251-423)||(44368517-44368685)
chr2 (422-503)||(44368716-44368798)
[»] chr6 (1 HSPs)
chr6 (331-420)||(2273245-2273333)
[»] chr3 (2 HSPs)
chr3 (275-403)||(40959324-40959448)
chr3 (275-401)||(40973868-40973990)
[»] scaffold0405 (1 HSPs)
scaffold0405 (26-66)||(14428-14468)
[»] chr4 (1 HSPs)
chr4 (20-66)||(27349915-27349961)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 8028446 - 8028697
Alignment:
Q  20 cagagtctgaaccttgtgttcgagctccgaaatgtatcgcatcttgctcctaatggcacaacaaaatcttggtctccgctgtcataataatttaacacat 119  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8028446 cagagtctgaaccttgtgttctagctccgaaatgtatcgcatcttgctcctagtggcacaacaaaatcttggtctccgctgtcataataatttaacacat 8028545  T
Q  120 gattagcttcttagtaatcagaggatttcaagagaaatgatcaatagagatttggaagcccgatagtgagtaaaacttgtaaggagttgttctgataaaa 219  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  8028546 gattagcttcttagtaataagaggatttcaagagaaatgatcaatagagatttggaagcctgatagtgagtaaaacttgtaaggagttgttatgataaaa 8028645  T
Q  220 gatgtaaaatgaataataaagtatagtatctatagtcaattggtctcttttg 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8028646 gatgtaaaatgaataataaagtatagtatctatagtcaattggtctcttttg 8028697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 71 - 251
Target Start/End: Complemental strand, 13949443 - 13949263
Alignment:
Q  71 aatggcacaacaaaatcttggtctccgctgtcataataatttaacacatgattagcttcttagtaatcagaggatttcaagagaaatgatcaatagagat 170  Q
    |||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  13949443 aatggcacaactgaatcttggtctctgctgtcataataatttaacacatgattagcttcttagtaatcagaggatttcaagagaaatgattaacagagat 13949344  T
Q  171 ttggaagcccgatagtgagtaaaacttgtaaggagttgttctgataaaagatgtaaaatgaataataaagtatagtatcta 251  Q
    ||||||||| || |||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||    
T  13949343 ttggaagcctgagagtgagtaaaacttgtaaggagtcattcggataaaagatgtaaaatgaataataaagtatagtatcta 13949263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 286 - 423
Target Start/End: Original strand, 8029418 - 8029555
Alignment:
Q  286 ctgaaaacacatactgctggaatatggttttgaacaatccgttttgagaattggaagcatattaatgtcaggatctgtatcactgtaatttaaaacactg 385  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8029418 ctgaaaacccatgctgctggaatatggttttgaacaatccgttttgagaattggaagcatattaatgtcgggatctgtatcactgtaatttaaaacactg 8029517  T
Q  386 caataaagaaaaagtgcagattagacatcagatcacta 423  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8029518 caataaagaaaaagtgcagattagacatcagatcacta 8029555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 251 - 423
Target Start/End: Complemental strand, 13949167 - 13948999
Alignment:
Q  251 atagtcaattggtctcttttgttgaaattaattacctgaaaacacatactgctggaatatggttttgaacaatccgttttgagaattggaagcatattaa 350  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||   |||||| |||||||||||||||||| ||||||||||||||||||||    
T  13949167 atagtcaattggtctcttttgttgaaattaattacctgaaaacccatactg---gaatattgttttgaacaatccgttt-gagaattggaagcatattaa 13949072  T
Q  351 tgtcaggatctgtatcactgtaatttaaaacactgcaataaagaaaaagtgcagattagacatcagatcacta 423  Q
    ||| ||| | ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  13949071 tgttaggttttgtatcactgtaatttaaaacactgcaataaagaaaaagtgcatatcagacatcagatcacta 13948999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 421 - 491
Target Start/End: Original strand, 8029601 - 8029671
Alignment:
Q  421 ctattatgattatagcggtgaagatttcaagtaagtttaaaaattcaattatcaaaattcaagcaaatgaa 491  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8029601 ctattatgattatagcggtcaagatttcaagtaagtttaaaaattcaattatcaaaattcaagcaaatgaa 8029671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 331 - 420
Target Start/End: Complemental strand, 35346272 - 35346184
Alignment:
Q  331 gagaattggaagcatattaatgtcaggatctgtatcactgtaatttaaaacactgcaataaagaaaaagtgcagattagacatcagatca 420  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||  |||| ||||||||    
T  35346272 gagaattgaaagcatattaatgttaggatatgtatcactgtaatttaaaacactgcaataaag-aaaagtgcagaccagacctcagatca 35346184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 421 - 503
Target Start/End: Complemental strand, 13948969 - 13948886
Alignment:
Q  421 ctattatgattatagcggtgaagatttcaagtaagtttaaaaat-tcaattatcaaaattcaagcaaatgaaatcaacacgaaa 503  Q
    |||||||||||||||| || |||||||||||||||||| ||||| |||||||||||||||||||||||  ||||||||| ||||    
T  13948969 ctattatgattatagcagtcaagatttcaagtaagtttgaaaatctcaattatcaaaattcaagcaaacaaaatcaacatgaaa 13948886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 71 - 254
Target Start/End: Complemental strand, 35163883 - 35163700
Alignment:
Q  71 aatggcacaacaaaatcttggtctccgctgtcataataatttaacacatgattagcttcttagtaatcagaggatttcaagagaaatgatcaatagagat 170  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35163883 aatggcacaacgaaatcttggtctccgctgtcataataatttaacacatgattagcttcttagtaatcagaggatttcaagagaaatgattaatagagat 35163784  T
Q  171 ttggaagcccgatagtgagtaaaacttgtaaggagttgttctgataaaagatgtaaaatgaataataaagtatagtatctatag 254  Q
    ||||||||| || |||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||    
T  35163783 ttggaagcctgagagtgagtaaaacttgtaaggagtcattcggataaaagatgtaaaatgaataataaagtatagtatctatag 35163700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 331 - 420
Target Start/End: Complemental strand, 4010665 - 4010576
Alignment:
Q  331 gagaattggaagca-tattaatgtcaggatctgtatcactgtaatttaaaacactgcaataaagaaaaagtgcagattagacatcagatca 420  Q
    |||||||| ||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||  |||| ||||||||    
T  4010665 gagaattgaaagcaatattaatgttaggatatgtatcactgtaatttaaaacactgcaataaag-aaaagtgcagaccagacctcagatca 4010576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 35163607 - 35163567
Alignment:
Q  251 atagtcaattggtctcttttgttgaaattaattacctgaaa 291  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  35163607 atagccaattggtctcttttgttgaaattaattacctgaaa 35163567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 70 - 254
Target Start/End: Original strand, 30904012 - 30904196
Alignment:
Q  70 taatggcacaacaaaatcttggtctccgctgtcataataatttaacacatgattagcttcttagtaatcagaggatttcaagagaaatgatcaatagaga 169  Q
    ||||||||||||  ||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  30904012 taatggcacaacggaatcttggtctccgctgtcgtgataatttaacacatgattagcttcttagtattcagaagatttcaagagaaatgatcaatagaga 30904111  T
Q  170 tttggaagcccgatagtgagtaaaacttgtaaggagttgttctgataaaagatgtaaaatgaataataaagtatagtatctatag 254  Q
    |||||||||| || ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||||||||    
T  30904112 tttggaagcctgagagtgagtaaaacttgtatggagtcgttctaataaaagatgtaaaatgaataataaagtataatatctatag 30904196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 256 - 421
Target Start/End: Original strand, 30904295 - 30904456
Alignment:
Q  256 caattggtctcttttgttgaaattaattacctgaaaacacatactgctggaatatggttttgaacaatccgttttgagaattggaagcatattaatgtca 355  Q
    |||||||||||||||||||||||||||||||||||||  |||||||   ||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  30904295 caattggtctcttttgttgaaattaattacctgaaaatccatactg---gaatatggttttgaacaatccgttt-gagaattggaagcatattaatgtta 30904390  T
Q  356 ggatctgtatcactgtaatttaaaacactgcaataaagaaaaagtgcagattagacatcagatcac 421  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  30904391 ggatctgtatcactgtaatttaaaacactgcaatgaagaaaaagtgcagatcagacatcagatcac 30904456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 331 - 420
Target Start/End: Complemental strand, 39344820 - 39344732
Alignment:
Q  331 gagaattggaagcatattaatgtcaggatctgtatcactgtaatttaaaacactgcaataaagaaaaagtgcagattagacatcagatca 420  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||  |||| ||||||||    
T  39344820 gagaattgaaagcatattaatgttaggatatgtatcactgtaatttaaaacactgcaataaag-aaaagtgcagaccagacctcagatca 39344732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 477
Target Start/End: Original strand, 30904483 - 30904540
Alignment:
Q  421 ctattatgattatagcggtgaagatttcaagtaagtttaaaaat-tcaattatcaaaa 477  Q
    |||||||||||||||| || |||||||||||||||||||||||| ||||||| |||||    
T  30904483 ctattatgattatagcagtcaagatttcaagtaagtttaaaaatctcaattagcaaaa 30904540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 6e-66; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 71 - 242
Target Start/End: Original strand, 1601502 - 1601672
Alignment:
Q  71 aatggcacaacaaaatcttggtctccgctgtcataataatttaacacatgattagcttcttagtaatcagaggatttcaagagaaatgatcaatagagat 170  Q
    |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1601502 aatggcacaacggaatcttggtctccactgtcataataatttaacacatgattagcttcttagtaatcagaggatttcaagagaaatgat-aatagagat 1601600  T
Q  171 ttggaagcccgatagtgagtaaaacttgtaaggagttgttctgataaaagatgtaaaatgaataataaagta 242  Q
    |||||| || || |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||    
T  1601601 ttggaaacctgagagtgagtaaaacttgtaaggggtcgttcggataaaagatgtaaaatgaataataaagta 1601672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 251 - 423
Target Start/End: Original strand, 1603031 - 1603199
Alignment:
Q  251 atagtcaattggtctcttttgttgaaattaattacctgaaaacacatactgctggaatatggttttgaacaatccgttttgagaattggaagcatattaa 350  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||   |||||| |||||||||||||||||| ||||||||||||||||||||    
T  1603031 atagccaattggtctcttttgttgaaattaattacctgaaaacccatactg---gaatattgttttgaacaatccgttt-gagaattggaagcatattaa 1603126  T
Q  351 tgtcaggatctgtatcactgtaatttaaaacactgcaataaagaaaaagtgcagattagacatcagatcacta 423  Q
    ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| || | ||||||||||||||    
T  1603127 tgttaggatttgtatcattgtaatttaaaacactgcaataaagaaaaagtgcatatcaaacatcagatcacta 1603199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 71 - 192
Target Start/End: Original strand, 1661170 - 1661291
Alignment:
Q  71 aatggcacaacaaaatcttggtctccgctgtcataataatttaacacatgattagcttcttagtaatcagaggatttcaagagaaatgatcaatagagat 170  Q
    |||||||||||  |||||| |||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||    
T  1661170 aatggcacaacggaatctttgtctccactgtcataataatttaacacatgattagctttatagtaatcagaggatttcaagagaaatgattaatagagat 1661269  T
Q  171 ttggaagcccgatagtgagtaa 192  Q
    ||||||| | || |||||||||    
T  1661270 ttggaagtctgagagtgagtaa 1661291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 422 - 503
Target Start/End: Original strand, 1603230 - 1603312
Alignment:
Q  422 tattatgattatagcggtgaagatttcaagtaagtttaaaaat-tcaattatcaaaattcaagcaaatgaaatcaacacgaaa 503  Q
    ||||||||||||||| || |||||||||||||||||| ||||| |||||||||||||||||| ||||  ||||||||| ||||    
T  1603230 tattatgattatagcagtcaagatttcaagtaagtttgaaaatctcaattatcaaaattcaaccaaacaaaatcaacatgaaa 1603312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 1661411 - 1661443
Alignment:
Q  259 ttggtctcttttgttgaaattaattacctgaaa 291  Q
    |||||||||||||||||||||||||||||||||    
T  1661411 ttggtctcttttgttgaaattaattacctgaaa 1661443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 251 - 423
Target Start/End: Original strand, 44368517 - 44368685
Alignment:
Q  251 atagtcaattggtctcttttgttgaaattaattacctgaaaacacatactgctggaatatggttttgaacaatccgttttgagaattggaagcatattaa 350  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||   |||||| |||||||||||||||||| ||||||||||||||||||||    
T  44368517 atagccaattggtctcttttgttgaaattaattacctgaaaacccatactg---gaatattgttttgaacaatccgttt-gagaattggaagcatattaa 44368612  T
Q  351 tgtcaggatctgtatcactgtaatttaaaacactgcaataaagaaaaagtgcagattagacatcagatcacta 423  Q
    ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| || | ||||||||||||||    
T  44368613 tgttaggatttgtatcattgtaatttaaaacactgcaataaagaaaaagtgcatatcaaacatcagatcacta 44368685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 422 - 503
Target Start/End: Original strand, 44368716 - 44368798
Alignment:
Q  422 tattatgattatagcggtgaagatttcaagtaagtttaaaaat-tcaattatcaaaattcaagcaaatgaaatcaacacgaaa 503  Q
    ||||||||||||||| || |||||||||||||||||| ||||| |||||||||||||||||| ||||  ||||||||| ||||    
T  44368716 tattatgattatagcagtcaagatttcaagtaagtttgaaaatctcaattatcaaaattcaaccaaacaaaatcaacatgaaa 44368798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 331 - 420
Target Start/End: Complemental strand, 2273333 - 2273245
Alignment:
Q  331 gagaattggaagcatattaatgtcaggatctgtatcactgtaatttaaaacactgcaataaagaaaaagtgcagattagacatcagatca 420  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||  |||| ||||||||    
T  2273333 gagaattgaaagcatattaatgttaggatatgtatcactgtaatttaaaacactgcaataaag-aaaagtgcagaccagacctcagatca 2273245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 275 - 403
Target Start/End: Original strand, 40959324 - 40959448
Alignment:
Q  275 aaattaattacctgaaaacacatactgctggaatatggttttgaacaatccgttttgagaattggaagcatattaatgtcaggatctgtatcactgtaat 374  Q
    |||||||||||||| |||| |||| ||   ||||||| |||||||| |||||||| ||||||||||||||||| || |||||||||||| |  || ||||    
T  40959324 aaattaattacctgtaaacccatattg---gaatatgattttgaactatccgttt-gagaattggaagcatatcaacgtcaggatctgtgttgctataat 40959419  T
Q  375 ttaaaacactgcaataaagaaaaagtgca 403  Q
    | ||||||||||||| ||||||| |||||    
T  40959420 tcaaaacactgcaatgaagaaaatgtgca 40959448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 401
Target Start/End: Complemental strand, 40973990 - 40973868
Alignment:
Q  275 aaattaattacctgaaaacacatactgctggaatatggttttgaacaatccgttttgagaattggaagcatattaatgtcaggatctgtatcactgtaat 374  Q
    |||||||||||||  |||| |||||||   |||||||||||||||| ||||| |||||||| |||||| ||||| || ||  |||||| |||  ||||||    
T  40973990 aaattaattacctataaacccatactg---gaatatggttttgaactatccg-tttgagaactggaagtatattgatatcgtgatctgcatcgttgtaat 40973895  T
Q  375 ttaaaacactgcaataaagaaaaagtg 401  Q
    |||||||||| ||| ||  ||||||||    
T  40973894 ttaaaacactacaacaataaaaaagtg 40973868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0405 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0405
Description:

Target: scaffold0405; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 14428 - 14468
Alignment:
Q  26 ctgaaccttgtgttcgagctccgaaatgtatcgcatcttgc 66  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  14428 ctgaaccttgtgttctagctccgaaatgtatcgcatcttgc 14468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 27349961 - 27349915
Alignment:
Q  20 cagagtctgaaccttgtgttcgagctccgaaatgtatcgcatcttgc 66  Q
    ||||||||||||||||||||| ||||||||||| |||||||| ||||    
T  27349961 cagagtctgaaccttgtgttctagctccgaaatatatcgcattttgc 27349915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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