View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6814_high_4 (Length: 332)

Name: NF6814_high_4
Description: NF6814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6814_high_4
NF6814_high_4
[»] chr7 (1 HSPs)
chr7 (7-314)||(8763782-8764081)


Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 314
Target Start/End: Original strand, 8763782 - 8764081
Alignment:
Q  7 aatattatatagaagaccaaaatttgaccacatttttaaagaattaatgaaagaaattttagtctattttaaataacttttcggtcaaattaacaccaaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8763782 aatattatatagaagaccaaaatttgaccacatttttaaagaattaatgaaagaaattttagtctattttaaataacttttcggtcaaattaacaccaaa 8763881  T
Q  107 ttactgaggtatttttcatgaaaattgtaaggttaagataataaagagctgaaattctaaaataaatgggtattaaatttacactttgtttagtgcaact 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8763882 ttactgaggtatttttcatgaaaattgtaaggttaagataataaagagctgaaattctaaaataaatgggtattaaatttacactttgtttagtgcaact 8763981  T
Q  207 atcaatttaggagcccaaatccttaagcatgtttgcataataaacaagtaagcattaaaaactggtaaaccctatgcatgcaaagaaaaacaattgcaat 306  Q
    |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8763982 atc--------agcccaaatccttaagcatgtttgcataataaacaagtaagcattaaaaactggtaaaccctatgcatgcaaagaaaaacaattgcaat 8764073  T

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