View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6814_low_2 (Length: 563)
Name: NF6814_low_2
Description: NF6814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6814_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 7 - 527
Target Start/End: Original strand, 28106736 - 28107256
Alignment:
| Q |
7 |
gtttcaaatatccaaaccagaggagaagaatagtgaaagttactttgtggaaactggcgattggtatcagcggaggaggacgcgttggtgtgtgtagatg |
106 |
Q |
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| T |
28106736 |
gtttcaaatatccaaaccagaggagaagaatagtgaaatttacttggtggaaactggcgattggtatcagcggaggaggacgcgttggtgcgtgtagatg |
28106835 |
T |
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| Q |
107 |
tcttcctcttctttcttttagatccatgacacaaggacacatcagatgggagtggtgaatcaatgggaggtggaggaggttgttgaggtttggtggcagg |
206 |
Q |
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| T |
28106836 |
tcttcctcttctttcttttagatccatgacacaaggacacatcagaagggagtggtgaatcgatgggaggaggaggaggttgttgaggtttggtggcagg |
28106935 |
T |
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| Q |
207 |
taaactggattttgaagagggcactcctgttccttcatcaacctcaaatgaagcgttctcttcctcagagtttgaattcgatttgagagaaggtcttcct |
306 |
Q |
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| T |
28106936 |
taaactggattttgaagagggcactcctgttccttcatcaacctcaaatgaagcgttctcttcctcagagtttgaattcgatttgagagaaggtcttcct |
28107035 |
T |
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| Q |
307 |
cttccttcaaccctagctactttccgagatgttgcaattcctattccaatcaatcaagaaattagcaaaggcattcattcattggaaacaaacatcaaat |
406 |
Q |
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| T |
28107036 |
cttccttcaaccctagctactttccgagatgttgcaattcctattccaatcaatcaagaaattagcaaaggcagtcattcattggaaacaaacatcaaat |
28107135 |
T |
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| Q |
407 |
caaatcaaatgaaaaca--ataccattaatgtggactcgttttttagtctttacccgaaccctagctgctttacaa------gatgatgatggagttgtt |
498 |
Q |
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| T |
28107136 |
--------atgaaaacaatataccattaacgtggactcgttttttagtattaaaccgaaccctagctggtttccaagatgatgatgatgatggaattgtt |
28107227 |
T |
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| Q |
499 |
cctgctacaataaatcaagaactcaatta |
527 |
Q |
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| T |
28107228 |
cctgctaaaattaatcaagaactaaatta |
28107256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 222 - 340
Target Start/End: Complemental strand, 28087366 - 28087245
Alignment:
| Q |
222 |
agagggcactcctgttccttcatcaacctcaaatgaagcgttct---cttcctcagagtttgaattcgatttgagagaaggtcttcctcttccttcaacc |
318 |
Q |
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| T |
28087366 |
agagggcactcctgttccttcatcaacctcgaatgaagcgttcttctcttcgtcagagtttgaaatcgatttgagagacggtcttcctcttccttcaacc |
28087267 |
T |
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| Q |
319 |
ctagctactttccgagatgttg |
340 |
Q |
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| T |
28087266 |
ctagctactttccgatatgttg |
28087245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 26644358 - 26644417
Alignment:
| Q |
101 |
tagatgtcttcctcttctttcttttagatccatgacacaaggacacatcagatgggagtg |
160 |
Q |
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| T |
26644358 |
tagatgtctttctcttctttcttttagatccatgacacacggatacatcagaagggagtg |
26644417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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