View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6814_low_8 (Length: 307)
Name: NF6814_low_8
Description: NF6814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6814_low_8 |
 | |
|
| [»] scaffold0341 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 47758746 - 47759048
Alignment:
| Q |
1 |
tgatctaataaagcataaattatggcctaccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccag |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47758746 |
tgatctaataaagcatatattatggcctaccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccag |
47758845 |
T |
|
| Q |
101 |
acaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaacatccccctgtcctgaatttgttgac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47758846 |
acaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaacatccccctgtcctgaatttgttgac |
47758945 |
T |
|
| Q |
201 |
aaccttttgactgcaatgacttgtccaccggcaagtataccctgcaaatatatttcatttgtgtataacaagaatgttaaagatgaagaatgtgatgtcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
47758946 |
aaccttttgactgcaatgacttgtccaccggcaagtataccctgcaaatatatttcatttgtgtataacaagaatgttaaagatgaagaatgtgatgttc |
47759045 |
T |
|
| Q |
301 |
atc |
303 |
Q |
| |
|
||| |
|
|
| T |
47759046 |
atc |
47759048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 3 - 303
Target Start/End: Original strand, 47711850 - 47712150
Alignment:
| Q |
3 |
atctaataaagcataaattatggcctaccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccagac |
102 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||| |||| |
|
|
| T |
47711850 |
atctaataaagcatatattatggcctaccaaatataaaataatcaagacttttattcggaacaaattcatagataagcaatctttctcttccttctagac |
47711949 |
T |
|
| Q |
103 |
aaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaacatccccctgtcctgaatttgttgacaa |
202 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
47711950 |
aaaaaccaagtagtctaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaa |
47712049 |
T |
|
| Q |
203 |
ccttttgactgcaatgacttgtccaccggcaagtataccctgcaaatatatttcatttgtgtataacaagaatgttaaagatgaagaatgtgatgtccat |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
47712050 |
ccttttgactgcaatgacttgtccaccggcaagtataccctgcaaatatatttcatttgtgtataaaaagaatgttaaagatgaagaatgtgatgttcat |
47712149 |
T |
|
| Q |
303 |
c |
303 |
Q |
| |
|
| |
|
|
| T |
47712150 |
c |
47712150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 3 - 268
Target Start/End: Original strand, 47744365 - 47744630
Alignment:
| Q |
3 |
atctaataaagcataaattatggcctaccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccagac |
102 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
47744365 |
atctaataaagcatatattatggcctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagac |
47744464 |
T |
|
| Q |
103 |
aaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaacatccccctgtcctgaatttgttgacaa |
202 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
47744465 |
aaaaaccaagtagtctaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaa |
47744564 |
T |
|
| Q |
203 |
ccttttgactgcaatgacttgtccaccggcaagtataccctgcaaatatatttcatttgtgtataa |
268 |
Q |
| |
|
||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47744565 |
ccttttgaccgcaatcacttgtccaccggcgagtataccctgcaaatatatttcatttctgtataa |
47744630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 3 - 303
Target Start/End: Original strand, 47716601 - 47716901
Alignment:
| Q |
3 |
atctaataaagcataaattatggcctaccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccagac |
102 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | ||||||||||||||||||||| |||| |
|
|
| T |
47716601 |
atctaataaagcatatattatggcctaccaaatataaaataatcaagacttttattaggaacaaattcatagaaaagcaatctttctcttccttctagac |
47716700 |
T |
|
| Q |
103 |
aaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaacatccccctgtcctgaatttgttgacaa |
202 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
47716701 |
aaaaaccaagtagtcaaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaa |
47716800 |
T |
|
| Q |
203 |
ccttttgactgcaatgacttgtccaccggcaagtataccctgcaaatatatttcatttgtgtataacaagaatgttaaagatgaagaatgtgatgtccat |
302 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| | |||| ||||||||||||||||| ||| |
|
|
| T |
47716801 |
ccttttgatcgcaatcacttgtccaccggcgagtataccctgtaaatatatttcatttgtgtataataagtactttaatgatgaagaatgtgatgttcat |
47716900 |
T |
|
| Q |
303 |
c |
303 |
Q |
| |
|
| |
|
|
| T |
47716901 |
c |
47716901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 33 - 227
Target Start/End: Complemental strand, 47774686 - 47774492
Alignment:
| Q |
33 |
aatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgat |
132 |
Q |
| |
|
||||| || ||||||||||||||||| | |||||||||||||| ||||| | ||||||| ||||| | || ||||||||||| | |||||||||||||| |
|
|
| T |
47774686 |
aatatgaagtaatcaagacttttatttgtaacatattcataaataagcagtttttctctcccttctaaactgaaaccaagtagcctaactaaatttcgat |
47774587 |
T |
|
| Q |
133 |
gttgaagcttagcgactaaaagcacttcattcttaaattcaacatccccctgtcctgaatttgttgacaaccttttgactgcaatgacttgtcca |
227 |
Q |
| |
|
||||||| || || |||||||| |||||||| |||||||| ||||| || || | |||| | | ||||| |||||||| ||||| | ||||||| |
|
|
| T |
47774586 |
gttgaagtttggctactaaaagtacttcatttttaaattccacatctccttggtcagaatctttggacaatcttttgaccgcaatcatttgtcca |
47774492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 6503394 - 6503584
Alignment:
| Q |
26 |
cctaccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaa |
125 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||| | ||||| ||||| | ||||||||||||||| || |||||||| |||| || ||||| | |
|
|
| T |
6503394 |
cctaccaaaaataaagtaatcaagacttttattacaaacaaactcatatacaagaagtctttctcttccttctaggcaaaaaccgagtaatctaactaga |
6503493 |
T |
|
| Q |
126 |
tttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaacatccccctgtcctgaatttgttgacaaccttttgactgcaa |
216 |
Q |
| |
|
|||| |||||||| ||||| ||||||| ||||||||||||||| || ||| || ||||| ||||| |||| ||||||||||| |||| |
|
|
| T |
6503494 |
tttctgtgttgaagtttagcaactaaaaacacttcattcttaaactctgaatctccttgtccagaattcattgataaccttttgacagcaa |
6503584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 6511014 - 6511204
Alignment:
| Q |
26 |
cctaccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaa |
125 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||| | ||||| | ||| | ||||||||||||||| || || ||||| |||| || |||||| |
|
|
| T |
6511014 |
cctaccaaaaataaagtaatcaagacttttattatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaa |
6511113 |
T |
|
| Q |
126 |
tttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaacatccccctgtcctgaatttgttgacaaccttttgactgcaa |
216 |
Q |
| |
|
||||| |||||||| ||||| ||||||| |||||||||||||| || | ||| || ||||| ||||| |||| ||||||||||| |||| |
|
|
| T |
6511114 |
tttcggtgttgaagtttagccactaaaaatacttcattcttaaactctagatctccttgtccggaattcattgataaccttttgacagcaa |
6511204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 254
Target Start/End: Complemental strand, 6525057 - 6524857
Alignment:
| Q |
54 |
ttattcggaacatattcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaa |
153 |
Q |
| |
|
|||||| ||||| ||||||| ||||| | ||||||||||||||| | ||| ||||||||||| | |||||| |||||||||||||| ||||| ||||||| |
|
|
| T |
6525057 |
ttattctgaacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaagtttcgatgttgaagtttagccactaaaa |
6524958 |
T |
|
| Q |
154 |
gcacttcattcttaaattcaacatccccctgtcctgaatttgttgacaaccttttgactgcaatgacttgtccaccggcaagtataccctgcaaatatat |
253 |
Q |
| |
|
||||||||||||||||| | ||| || || || |||| | |||||||||||||| |||| |||||||| || ||| ||||||| |||||||| |
|
|
| T |
6524957 |
ctacttcattcttaaattctaaatctccttggccagaatccctcgacaaccttttgacaccaatctcttgtccattggggagtctaccctgaaaatatat |
6524858 |
T |
|
| Q |
254 |
t |
254 |
Q |
| |
|
| |
|
|
| T |
6524857 |
t |
6524857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 227
Target Start/End: Original strand, 6498077 - 6498276
Alignment:
| Q |
28 |
taccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatt |
127 |
Q |
| |
|
||||||| || |||||||| |||||||| || ||||| ||||||| ||||| | ||||||||||||||| || | ||||| ||||||| ||||||||| |
|
|
| T |
6498077 |
taccaaaaatgaaataatcgagacttttgttttgaacaaattcatatacaagtactctttctcttccttctagtgagaaaccgagtagtctaactaaatt |
6498176 |
T |
|
| Q |
128 |
tcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaacatccccctgtcctgaatttgttgacaaccttttgactgcaatgacttgtcca |
227 |
Q |
| |
|
||| |||||||||||||| || ||||| || ||||||||||| || ||| || ||||| ||| | ||||||||||||| || ||||| |||||||| |
|
|
| T |
6498177 |
tcggtgttgaagcttagccaccaaaagtacctcattcttaaactccgaatctccttgtcccgaactcattgacaaccttttaacagcaatctcttgtcca |
6498276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 47770783 - 47770633
Alignment:
| Q |
28 |
taccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatt |
127 |
Q |
| |
|
|||||||||| || ||||||||||||||||| | |||| ||||||||| ||| | |||||| || ||||| | || |||||||| |||| ||||||||| |
|
|
| T |
47770783 |
taccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttctaaactgaaaccaagaagtctaactaaatt |
47770684 |
T |
|
| Q |
128 |
tcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaacatc |
178 |
Q |
| |
|
||||||||||||||| || ||||| | |||||||| |||||||| ||||| |
|
|
| T |
47770683 |
tcgatgttgaagcttggctactaataatacttcatttttaaattccacatc |
47770633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 210
Target Start/End: Original strand, 6515437 - 6515621
Alignment:
| Q |
26 |
cctaccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaa |
125 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||| | || || | ||| | |||||| || ||||| || || ||||| |||| || ||||||| |
|
|
| T |
6515437 |
cctaccaaaaataaagtaatcaagacttttattatgaacaaactcgtatataagtagtctttcactcccttctaggcagaaaccgagtaatctaactaaa |
6515536 |
T |
|
| Q |
126 |
tttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaacatccccctgtcctgaatttgttgacaaccttttga |
210 |
Q |
| |
|
||||| |||||||| ||||| | |||| ||| ||||||||||| || | ||| || ||||| ||||| |||| |||||||||| |
|
|
| T |
6515537 |
tttcggtgttgaagtttagccaggaaaaacacctcattcttaaactctagatctccttgtccagaattcattgataaccttttga |
6515621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 142
Target Start/End: Complemental strand, 47689917 - 47689803
Alignment:
| Q |
28 |
taccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatt |
127 |
Q |
| |
|
|||||||||| | |||||||||||||||||| | ||| | ||||||| || | |||||||||| || | ||| ||||| |||||| ||||||||| |
|
|
| T |
47689917 |
taccaaatatgatataatcaagacttttattggagacaaactcataaattagtagtctttctcttttttgtaaacagaaacctagtagtttaactaaatt |
47689818 |
T |
|
| Q |
128 |
tcgatgttgaagctt |
142 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
47689817 |
tcgatgttgaagctt |
47689803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 28 - 217
Target Start/End: Original strand, 27369137 - 27369326
Alignment:
| Q |
28 |
taccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatt |
127 |
Q |
| |
|
|||||||||| || ||||||||||||||||| | |||| ||||||||| ||| | ||||||||| ||||| ||||| ||||||||||| | ||||| ||| |
|
|
| T |
27369137 |
taccaaatatgaagtaatcaagacttttatttgaaacaaattcataaataagtagtctttctctcccttctagacagaaaccaagtagcctaactagatt |
27369236 |
T |
|
| Q |
128 |
tcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaacatccccctgtcctgaatttgttgacaaccttttgactgcaat |
217 |
Q |
| |
|
|||||||||||| || || |||||||| |||||||| ||||| |||||||| || || | |||||||||||||||||||| || ||||| |
|
|
| T |
27369237 |
tcgatgttgaagtttggctactaaaagtacttcatttttaaactcaacatctccttggtcagaatttgttgacaaccttttcacagcaat |
27369326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 28 - 227
Target Start/End: Original strand, 28829285 - 28829484
Alignment:
| Q |
28 |
taccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatt |
127 |
Q |
| |
|
|||||||||| || || |||||||||||||| |||||| ||||||| ||||| ||||||||||| ||||| | | ||||||||| |||| ||||||||| |
|
|
| T |
28829285 |
taccaaatatgaagtagtcaagacttttattaggaacaaattcatagacaagtaatctttctctcccttcaacagtaaaaccaaggagtctaactaaatt |
28829384 |
T |
|
| Q |
128 |
tcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaacatccccctgtcctgaatttgttgacaaccttttgactgcaatgacttgtcca |
227 |
Q |
| |
|
||| |||||||| || || || ||| | ||||| ||||||||||| | ||| || || || |||||| | || |||||||| || ||||| ||||||||| |
|
|
| T |
28829385 |
tcggtgttgaagtttggccaccaaacgtacttcgttcttaaattctagatctccttgaccagaatttatggataaccttttcaccgcaatcacttgtcca |
28829484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 169
Target Start/End: Original strand, 28860321 - 28860462
Alignment:
| Q |
28 |
taccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatt |
127 |
Q |
| |
|
|||||||||| || || |||||||||||||| |||| | ||||||| ||||| | ||||||||| ||||| | | |||||||||||||| ||||||||| |
|
|
| T |
28860321 |
taccaaatatgaagtagtcaagacttttattgggaataaattcatagacaagtagtctttctctcccttcaatagtaaaaccaagtagtctaactaaatt |
28860420 |
T |
|
| Q |
128 |
tcgatgttgaagcttagcgactaaaagcacttcattcttaaa |
169 |
Q |
| |
|
|| |||||||| || || | ||||||||||||||||||||| |
|
|
| T |
28860421 |
ccggtgttgaagtttggccattaaaagcacttcattcttaaa |
28860462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 28 - 227
Target Start/End: Original strand, 28854962 - 28855161
Alignment:
| Q |
28 |
taccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatt |
127 |
Q |
| |
|
|||||||||| || || |||||||||||||| |||||| ||||||| || || | ||||||||| ||||| | | ||||||||||| | ||||||||| |
|
|
| T |
28854962 |
taccaaatatgaagtagtcaagacttttattgggaacaaattcatagactagtagtctttctctcccttcgatagtaaaaccaagtaacctaactaaatt |
28855061 |
T |
|
| Q |
128 |
tcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaacatccccctgtcctgaatttgttgacaaccttttgactgcaatgacttgtcca |
227 |
Q |
| |
|
| |||||||||| ||||| | || | | ||||||||||||||| | ||| || || || ||||| | |||||||||||||| ||||| ||||||||| |
|
|
| T |
28855062 |
ttgatgttgaagtttagccatcaagattaattcattcttaaattccagatctccttggccagaattcatggacaaccttttgacggcaatcacttgtcca |
28855161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 208
Target Start/End: Original strand, 28874911 - 28875071
Alignment:
| Q |
48 |
agacttttattcggaacatattcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcga |
147 |
Q |
| |
|
||||||||||| |||| | ||||||| ||||| | ||||||||| ||||| | | |||||||||||||| ||| ||||| || |||||||| || || | |
|
|
| T |
28874911 |
agacttttattgggaataaattcatagacaagtagtctttctctcccttcaatagtaaaaccaagtagtctaaccaaattccggtgttgaagtttggcca |
28875010 |
T |
|
| Q |
148 |
ctaaaagcacttcattcttaaattcaacatccccctgtcctgaatttgttgacaacctttt |
208 |
Q |
| |
|
|||||||||||||||||||||||| | ||| || || || ||||| | ||||||||||| |
|
|
| T |
28875011 |
ttaaaagcacttcattcttaaattctatatctccttggccagaattcatggacaacctttt |
28875071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 454842 - 454895
Alignment:
| Q |
28 |
taccaaatataaaataatcaagacttttattcggaacatattcataaacaagca |
81 |
Q |
| |
|
||||||||| || ||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
454842 |
taccaaataagaagtaatcaagacttttatttagtacatattcataaacaagca |
454895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 12695 - 12884
Alignment:
| Q |
26 |
cctaccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaa |
125 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||| | ||||| | ||| | ||||||||||||||| || || ||||| |||| || |||||| |
|
|
| T |
12695 |
cctaccaaaaataaagtaatcaagacttttattatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaa |
12794 |
T |
|
| Q |
126 |
tttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaacatccccctgtcctgaatttgttgacaaccttttgactgcaa |
216 |
Q |
| |
|
||||| |||||||| ||||| ||||||| |||||||||||||| || | ||| || ||||| ||||| |||| ||||||||||| |||| |
|
|
| T |
12795 |
tttcggtgttgaagtttagccactaaaa-tacttcattcttaaactctagatctccttgtccggaattcattgataaccttttgacagcaa |
12884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 216
Target Start/End: Original strand, 5092 - 5266
Alignment:
| Q |
42 |
taatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagct |
141 |
Q |
| |
|
||||||||||||||||| |||| | ||||| ||||| | ||||||||||||||| || |||||||| |||| || ||||| ||||| |||||||| | |
|
|
| T |
5092 |
taatcaagacttttattacaaacaaactcatatacaagaagtctttctcttccttctaggcaaaaaccgagtaatctaactagatttctgtgttgaagtt |
5191 |
T |
|
| Q |
142 |
tagcgactaaaagcacttcattcttaaattcaacatccccctgtcctgaatttgttgacaaccttttgactgcaa |
216 |
Q |
| |
|
|||| ||||||| ||||||||||||||| || ||| || ||||| ||||| |||| ||||||||||| |||| |
|
|
| T |
5192 |
tagcaactaaaaacacttcattcttaaactctgaatctccttgtccagaattcattgataaccttttgacagcaa |
5266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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