View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6814_low_9 (Length: 255)
Name: NF6814_low_9
Description: NF6814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6814_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 3897300 - 3897094
Alignment:
| Q |
19 |
aatgtaaaccaatgagatgataaatttgaaggaattgaaattaagatttaaatgttgattttatgtaaagtcccaaaactactaaattccaaagaaacat |
118 |
Q |
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| T |
3897300 |
aatgtaaaccaatgagatgataaatttgaaggaattgaaattaaaattta-------------tgtaaagtcccaaaactaccaaattccaaagaaacat |
3897214 |
T |
|
| Q |
119 |
ataggagatgaaaagggaagnnnnnnnnctaatacggaaaattaaattgctttctatcacagtttatatcaacctttgtggtaggtacttcaataatcaa |
218 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3897213 |
ataggagatgaaaagggaagaaaaaaaactaatacggaaaattaaattgctttctatcacagtttatatcaacctttgtggtaggtacttcaataatcaa |
3897114 |
T |
|
| Q |
219 |
aaggaagaacacaaaatatt |
238 |
Q |
| |
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|||||||||||||||||||| |
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| T |
3897113 |
aaggaagaacacaaaatatt |
3897094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 3859898 - 3859779
Alignment:
| Q |
19 |
aatgtaaaccaatgagatgataaatttgaaggaattgaaattaagatttaaatgttgattttatgtaaagtcccaaaactactaaattccaaagaaacat |
118 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| | | |
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| T |
3859898 |
aatgtaaaccaatgtgatgataaatttgaaggaattgaaattaaaatttaaagaatgattgtatgtaaagtcccaaaactactaaattccaaagaatcgt |
3859799 |
T |
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| Q |
119 |
ataggagatgaaaagggaag |
138 |
Q |
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|||| ||||||||||||||| |
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| T |
3859798 |
atagaagatgaaaagggaag |
3859779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 3883499 - 3883346
Alignment:
| Q |
19 |
aatgtaaaccaatgagatgataaatttgaaggaattgaaattaagatttaaatg-ttgattttatgtaaagtcccaaaactactaaattccaaagaaaca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
3883499 |
aatgtaaaccaatgagatgataaatttgaaggaattgaaatgaaaattgaaatgtttgattttatgtaaagtcccaaaaccactaaattccaaagaaaga |
3883400 |
T |
|
| Q |
118 |
tataggagatgaaaagggaagnnnnnnnnctaatacggaaaattaaattgcttt |
171 |
Q |
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||||| |||| ||||| ||| |||||||| |||||||||||||||| |
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| T |
3883399 |
tatagaagatataaaggaaagagaaaaaactaatacgaaaaattaaattgcttt |
3883346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 3883328 - 3883296
Alignment:
| Q |
206 |
cttcaataatcaaaaggaagaacacaaaatatt |
238 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |
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| T |
3883328 |
cttcaataatcaaaaggaagaacacgaaatatt |
3883296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 16078125 - 16078018
Alignment:
| Q |
21 |
tgtaaaccaatgagatgataaatttgaaggaattgaaattaagatttaaatgttgattttatgtaaagtcccaaaactactaaattccaaagaaacatat |
120 |
Q |
| |
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||||||||| || |||||| |||||||||||| | ||| ||||||| ||||| ||||||| |||| ||||||||||||||||||| |||||||| |
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| T |
16078125 |
tgtaaaccagtgtgatgatgaatttgaaggaa-----aataaaatttaaagaatgattgtatgtaatgtcctaaaactactaaattccaaa-aaacatat |
16078032 |
T |
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| Q |
121 |
aggagatgaaaagg |
134 |
Q |
| |
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|| |||| |||||| |
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|
| T |
16078031 |
agtagattaaaagg |
16078018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 16078004 - 16077960
Alignment:
| Q |
154 |
ggaaaattaaattgctttctatcacagtttatatcaacctttgtg |
198 |
Q |
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|||||| ||||||||||||||||||| ||| | |||||||||||| |
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| T |
16078004 |
ggaaaaataaattgctttctatcacaatttctctcaacctttgtg |
16077960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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