View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6815_high_19 (Length: 226)

Name: NF6815_high_19
Description: NF6815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6815_high_19
NF6815_high_19
[»] chr2 (1 HSPs)
chr2 (80-159)||(28109579-28109658)
[»] chr8 (2 HSPs)
chr8 (74-161)||(36938997-36939084)
chr8 (114-160)||(38789345-38789392)
[»] chr7 (2 HSPs)
chr7 (80-159)||(26406452-26406531)
chr7 (120-161)||(25533108-25533149)
[»] chr4 (7 HSPs)
chr4 (83-159)||(38370600-38370678)
chr4 (162-209)||(24014006-24014053)
chr4 (79-116)||(6140062-6140099)
chr4 (114-161)||(87107-87154)
chr4 (114-161)||(41401465-41401512)
chr4 (79-117)||(41401410-41401448)
chr4 (114-161)||(6140113-6140160)
[»] chr3 (2 HSPs)
chr3 (114-161)||(19622329-19622376)
chr3 (114-158)||(35174136-35174180)
[»] chr5 (2 HSPs)
chr5 (79-116)||(32734509-32734546)
chr5 (114-161)||(32734448-32734495)
[»] scaffold0045 (2 HSPs)
scaffold0045 (114-161)||(76930-76977)
scaffold0045 (81-117)||(76875-76911)
[»] chr1 (1 HSPs)
chr1 (124-161)||(49141243-49141280)


Alignment Details
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 28109579 - 28109658
Alignment:
Q  80 tgaaaatgatttgattttgatgaagagaattttatttttctgggttatatgaagattgaccaaggagtatgaatgtgatg 159  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||  |||||||||||||||||||    
T  28109579 tgaaaatgatttgattttgatgaagagaatttttttcttctgggttatatgaagattgatgaaggagtatgaatgtgatg 28109658  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 36939084 - 36938997
Alignment:
Q  74 agacaatgaaaatgatttgattttgatgaagagaattttatttttctgggttatatgaagattgaccaaggagtatgaatgtgatgat 161  Q
    ||||| |||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||  || ||||||||||||||||||    
T  36939084 agacagtgaaaatgatttgattttgatgaagagatttttttttctctgggttatatgaagattgattaatgagtatgaatgtgatgat 36938997  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 38789392 - 38789345
Alignment:
Q  114 tttttctgggttatatgaagattgaccaag-gagtatgaatgtgatga 160  Q
    |||||||||||||||| |||||||||||||  ||||||||||||||||    
T  38789392 tttttctgggttatattaagattgaccaagaaagtatgaatgtgatga 38789345  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 26406531 - 26406452
Alignment:
Q  80 tgaaaatgatttgattttgatgaagagaattttatttttctgggttatatgaagattgaccaaggagtatgaatgtgatg 159  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||  |||||||||||||||||||    
T  26406531 tgaaaatgatttgattttgatgaagagaatttttttcttctgggttatatgaagactgatgaaggagtatgaatgtgatg 26406452  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 25533108 - 25533149
Alignment:
Q  120 tgggttatatgaagattgaccaaggagtatgaatgtgatgat 161  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  25533108 tgggttatatgaagattgactaagaagtatgaatgtgatgat 25533149  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 38370678 - 38370600
Alignment:
Q  83 aaatgatttgattttgatgaagagaattttattt--ttctgggttatatgaagattgaccaaggagtatgaatgtgatg 159  Q
    |||||||||||||||||||||||||||||| |||  |||||  |||||||||||||||  |||||||||||||||||||    
T  38370678 aaatgatttgattttgatgaagagaatttttttttcttctgtattatatgaagattgatgaaggagtatgaatgtgatg 38370600  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 24014006 - 24014053
Alignment:
Q  162 attttatcctttttcaaatttccttagttacttactacataatatttt 209  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  24014006 attttatcatttttcaaatttccttagttacttactacataatatttt 24014053  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 6140062 - 6140099
Alignment:
Q  79 atgaaaatgatttgattttgatgaagagaattttattt 116  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6140062 atgaaaatgatttgattttgatgaagagaattttattt 6140099  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 87154 - 87107
Alignment:
Q  114 tttttctgggttatatgaagattgaccaaggagtatgaatgtgatgat 161  Q
    ||||||||||||||||||| |||||| |||||||||||||||| ||||    
T  87154 tttttctgggttatatgaaaattgactaaggagtatgaatgtgttgat 87107  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 41401465 - 41401512
Alignment:
Q  114 tttttctgggttatatgaagattgaccaaggagtatgaatgtgatgat 161  Q
    ||||||||||||||||||| |||||| |||||||||||||||| ||||    
T  41401465 tttttctgggttatatgaaaattgactaaggagtatgaatgtgttgat 41401512  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 41401410 - 41401448
Alignment:
Q  79 atgaaaatgatttgattttgatgaagagaattttatttt 117  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  41401410 atgaaaatgatttgattttgatgatgagaattttatttt 41401448  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 6140113 - 6140160
Alignment:
Q  114 tttttctgggttatatgaagattgaccaaggagtatgaatgtgatgat 161  Q
    |||||||  ||||||||||||||||  |||||||||||||||||||||    
T  6140113 tttttctaagttatatgaagattgattaaggagtatgaatgtgatgat 6140160  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 19622376 - 19622329
Alignment:
Q  114 tttttctgggttatatgaagattgaccaaggagtatgaatgtgatgat 161  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  19622376 tttttctgggttatatgaagattgactaaggagtatgaatgtgatgat 19622329  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 35174136 - 35174180
Alignment:
Q  114 tttttctgggttatatgaagattgaccaaggagtatgaatgtgat 158  Q
    ||||||| ||||||||||||||| || ||||||||||||||||||    
T  35174136 tttttctaggttatatgaagattaactaaggagtatgaatgtgat 35174180  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 32734546 - 32734509
Alignment:
Q  79 atgaaaatgatttgattttgatgaagagaattttattt 116  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32734546 atgaaaatgatttgattttgatgaagagaattttattt 32734509  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 32734495 - 32734448
Alignment:
Q  114 tttttctgggttatatgaagattgaccaaggagtatgaatgtgatgat 161  Q
    ||||||| |||||||||||||||||  |||||||||||||||||||||    
T  32734495 tttttctaggttatatgaagattgattaaggagtatgaatgtgatgat 32734448  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 76930 - 76977
Alignment:
Q  114 tttttctgggttatatgaagattgaccaaggagtatgaatgtgatgat 161  Q
    ||||||||||||||||||| |||||  |||||||||||||||| ||||    
T  76930 tttttctgggttatatgaaaattgattaaggagtatgaatgtgttgat 76977  T

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Target: scaffold0045; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 76875 - 76911
Alignment:
Q  81 gaaaatgatttgattttgatgaagagaattttatttt 117  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  76875 gaaaatgatttgattttgatgatgagaaatttatttt 76911  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 49141243 - 49141280
Alignment:
Q  124 ttatatgaagattgaccaaggagtatgaatgtgatgat 161  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  49141243 ttatatgaagattgactaaggagtgtgaatgtgatgat 49141280  T

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