View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6815_high_2 (Length: 890)

Name: NF6815_high_2
Description: NF6815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6815_high_2
NF6815_high_2
[»] chr5 (8 HSPs)
chr5 (479-872)||(38087872-38088265)
chr5 (6-423)||(38088984-38089399)
chr5 (310-427)||(43146349-43146465)
chr5 (310-431)||(2134750-2134871)
chr5 (288-431)||(20256894-20257033)
chr5 (310-429)||(29668518-29668635)
chr5 (450-490)||(38088273-38088313)
chr5 (383-431)||(24147135-24147183)
[»] chr8 (9 HSPs)
chr8 (311-431)||(9305231-9305350)
chr8 (310-431)||(29525866-29525988)
chr8 (310-431)||(35163002-35163123)
chr8 (310-427)||(30233805-30233921)
chr8 (313-370)||(36675658-36675715)
chr8 (310-431)||(41774940-41775062)
chr8 (348-431)||(27768891-27768974)
chr8 (384-431)||(36676334-36676381)
chr8 (310-353)||(36676482-36676525)
[»] chr3 (6 HSPs)
chr3 (310-431)||(35637217-35637338)
chr3 (310-431)||(2663239-2663359)
chr3 (311-431)||(49323176-49323295)
chr3 (313-431)||(3984450-3984567)
chr3 (317-373)||(46411187-46411243)
chr3 (310-352)||(28212615-28212657)
[»] chr2 (5 HSPs)
chr2 (310-431)||(18058785-18058906)
chr2 (309-422)||(39822903-39823016)
chr2 (310-370)||(25628886-25628946)
chr2 (310-431)||(5737209-5737329)
chr2 (313-370)||(13466893-13466950)
[»] chr1 (7 HSPs)
chr1 (291-431)||(43824194-43824331)
chr1 (310-429)||(19563370-19563487)
chr1 (310-431)||(36384318-36384437)
chr1 (313-416)||(47459129-47459230)
chr1 (310-429)||(41677745-41677864)
chr1 (310-362)||(18283317-18283369)
chr1 (291-358)||(37028555-37028618)
[»] chr7 (3 HSPs)
chr7 (310-429)||(24879081-24879200)
chr7 (320-429)||(48065001-48065110)
chr7 (310-359)||(37025600-37025649)
[»] chr4 (2 HSPs)
chr4 (318-431)||(50470025-50470138)
chr4 (310-429)||(31799277-31799396)
[»] chr6 (1 HSPs)
chr6 (310-362)||(21508453-21508505)


Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 479 - 872
Target Start/End: Complemental strand, 38088265 - 38087872
Alignment:
Q  479 aaaagaaagaaaaactaaaattctcttaacgtacttgcatgagtagaaagaaatatcaaagttaacaaagaacaagtttattgacttgaatttaattaat 578  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38088265 aaaagaaagaaaaactaaaattctcttcacgtatttgcatgagtagaaagaaatatcaaagttaacaaagaacaagtttattgacttgaatttaattaat 38088166  T
Q  579 ttaagtagctgataattgtcacattgtatatcttaagctgctcaattatgtattcacaaagtaccttaaaaatttggtttctttatctaagaggtgtaag 678  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38088165 ttaagtagctgataattgtcacattgtatatcttaagctgctcaattatgtattcacaaagtagcttaaaaatttggtttctttatctaagaggtgtaag 38088066  T
Q  679 ggatgtgagcgtgtctcaatttttagacatagaatgtctcattgcaatattaacaaaagatcatttctatctctaacaatgaaccaaagaaaattaattc 778  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38088065 ggatgtgagcgtgtctcaatttttagacatagaatgtatcattgcaatattaacaaaagatcatttctatctctaacaatgaaccaaagaaaattaattc 38087966  T
Q  779 aaaaccatatctaacagcatagacaaattgaatccgtctccaatggaaaagttttggtctctaatctcttgtctcttctaagttagatatttat 872  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38087965 aaaaccatatctatcagcataggcaaattgaatccgtctccaatggaaaagttttggtctctaatctcttgtctcttctaagttagatatttat 38087872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 6 - 423
Target Start/End: Complemental strand, 38089399 - 38088984
Alignment:
Q  6 aaaatatgcccccatgacatctactaatacagacataacaaagaaatgtgaggaaaaccatctcgagcaaccactagacaaaattaaggatgtcaatttg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  38089399 aaaatatgcccccatgacatctactaatacagacataacaaagaaatgtgaggcaaaccctctcgagcaaccactagacaaaattaaggatgtcaatttg 38089300  T
Q  106 ttcttgcaagtgaaagtccatttgagaaatatcctacttgaagcctcgcgagaagaaagtttttctattggagatgcggattagggagaaagtttt-ccg 204  Q
    | |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||  |||||||||| || |||||||||||||| |||    
T  38089299 tacttgcaagtgaaagtccatttgagaaatatcccacttgaagccttgcgagaagagagtttttcttgtggagatgcgtatgagggagaaagttttcccg 38089200  T
Q  205 taggtgtttttgaggtggagattgggatcatactcgtcaacc--cgtgcgacctatctctaagtttattaaaataatatcatatgttgagatattcttgc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||| || ||||||||||||||||||||| ||||||||||||||||||||    
T  38089199 taggtgtttttgaggtggagattgggatcatactcgtcaacccgcgtgcgacctgtccctaagtttattaaaataatattatatgttgagatattcttgc 38089100  T
Q  303 atcaaccaactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaa 402  Q
    ||    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||         ||||||||||||||||||||    
T  38089099 at----caactctcatccaacacattattcttacacccaaccaataaaaatatgacacatgttattaattt-aaaaaaaatgtgattttaattaaggaaa 38089005  T
Q  403 tgaaaacataaatggtggtgg 423  Q
    |||||||||||||||||||||    
T  38089004 tgaaaacataaatggtggtgg 38088984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 310 - 427
Target Start/End: Complemental strand, 43146465 - 43146349
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 409  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||         |||||||||||||||||||||| ||||    
T  43146465 aactctcacccaacacattattcttacacccaaccaataaaaatatgacacatgttattaactt-taaaaaagtgtgattttaattaaggaaatggaaac 43146367  T
Q  410 ataaatggtggtgggtgg 427  Q
     |||||||||||||||||    
T  43146366 gtaaatggtggtgggtgg 43146349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 310 - 431
Target Start/End: Complemental strand, 2134871 - 2134750
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 409  Q
    |||||||| ||||||||| ||| ||||||  |||||||||||| |||||||||||| |||| ||         |||||||||||| ||||||||||||||    
T  2134871 aactctcagccaacacatcattgttacaccaaaccaataaaaaaatgacacatgttcttaactttaaaaaaagtgtgattttaatcaaggaaatgaaaac 2134772  T
Q  410 ataaatggtggtgggtggttct 431  Q
    ||||||||||||||||||||||    
T  2134771 ataaatggtggtgggtggttct 2134750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 288 - 431
Target Start/End: Original strand, 20256894 - 20257033
Alignment:
Q  288 ttgagatattcttgcatcaaccaactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaa-tttnnnnnnnnntgtg 386  Q
    |||||||||||||||||     |||||||| |||||||||| ||||||||| ||| ||||||||||||||||||||||||||| |||         ||||    
T  20256894 ttgagatattcttgcat----aaactctcatccaacacatttttcttacacccaa-caataaaaatatgacacatgttattaactttaaaaaaaagtgtg 20256988  T
Q  387 attttaattaaggaaatgaaaacataaatggtggtgggtggttct 431  Q
    ||||||  |||||||||| ||||||||||||||||||||||||||    
T  20256989 attttagctaaggaaatggaaacataaatggtggtgggtggttct 20257033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 310 - 429
Target Start/End: Complemental strand, 29668635 - 29668518
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 409  Q
    |||||||||| |||||||||||||||||  |||||||||||||||||||||||||| |||| ||         |||||||||||||||||||||| ||||    
T  29668635 aactctcacc-aacacattattcttacatccaaccaataaaaatatgacacatgttgttaactttaaaaaaagtgtgattttaattaaggaaatggaaac 29668537  T
Q  410 ataaatggtggtgggtggtt 429  Q
    |||||| |||| ||||||||    
T  29668536 ataaatagtgg-gggtggtt 29668518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 450 - 490
Target Start/End: Complemental strand, 38088313 - 38088273
Alignment:
Q  450 taccaatcattttattaacatcatcatccaaaagaaagaaa 490  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38088313 taccaatcattttattaacatcatcatccaaaagaaagaaa 38088273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 383 - 431
Target Start/End: Original strand, 24147135 - 24147183
Alignment:
Q  383 tgtgattttaattaaggaaatgaaaacataaatggtggtgggtggttct 431  Q
    |||||||||||||||| ||||| |||||||||||||| | |||||||||    
T  24147135 tgtgattttaattaagtaaatggaaacataaatggtgatcggtggttct 24147183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 311 - 431
Target Start/End: Complemental strand, 9305350 - 9305231
Alignment:
Q  311 actctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaaca 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||         ||||||||||||||||||||| ||||||    
T  9305350 actctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaactt-taaaaaagtgtgattttaattaaggaaataaaaaca 9305252  T
Q  411 taaatggtggtgggtggttct 431  Q
    |||||||||||||||||||||    
T  9305251 taaatggtggtgggtggttct 9305231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 310 - 431
Target Start/End: Complemental strand, 29525988 - 29525866
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaa-tttnnnnnnnnntgtgattttaattaaggaaatgaaaa 408  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||         |||||||||||||||||||||| |||    
T  29525988 aactctcaccaaacacattattcttacacccaaccaataaaaatatgacacatgttattaactttaaaaaagagtgtgattttaattaaggaaatggaaa 29525889  T
Q  409 cataaatggtggtgggtggttct 431  Q
    |||||||||||||| ||||||||    
T  29525888 cataaatggtggtgtgtggttct 29525866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 310 - 431
Target Start/End: Original strand, 35163002 - 35163123
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 409  Q
    |||||||  |||||||||||||||||||| | ||||||||||||||||||||||||||||| ||         |||||||||||||||||||||| ||||    
T  35163002 aactctcttccaacacattattcttacacccgaccaataaaaatatgacacatgttattaactttaaaaaaagtgtgattttaattaaggaaatggaaac 35163101  T
Q  410 ataaatggtggtgggtggttct 431  Q
    |||||||||||||||| |||||    
T  35163102 ataaatggtggtgggtagttct 35163123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 310 - 427
Target Start/End: Complemental strand, 30233921 - 30233805
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 409  Q
    |||||||||| ||||||| |||||||||| ||||||||||||| ||||||||||||||||| ||         ||||||||||||||| |||||||||||    
T  30233921 aactctcacctaacacatcattcttacacccaaccaataaaaa-atgacacatgttattaactttaaaaaaagtgtgattttaattaatgaaatgaaaac 30233823  T
Q  410 ataaatggtggtgggtgg 427  Q
    ||||||||||||||||||    
T  30233822 ataaatggtggtgggtgg 30233805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 313 - 370
Target Start/End: Original strand, 36675658 - 36675715
Alignment:
Q  313 tctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaa 370  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||    
T  36675658 tctcacccaatacattattcttacacccaaccaataaaaatatgacacatattattaa 36675715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 310 - 431
Target Start/End: Complemental strand, 41775062 - 41774940
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataaaaata-tgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaa 408  Q
    |||||||||||||||||| ||| |||||  |||| |||||||| | |||||||||||||| | ||         ||| |||||||||||||||||| |||    
T  41775062 aactctcacccaacacatcatttttacatccaacaaataaaaaaaatgacacatgttatttactttaaaaaaagtgttattttaattaaggaaatggaaa 41774963  T
Q  409 cataaatggtggtgggtggttct 431  Q
    ||||||||||||||| |||||||    
T  41774962 cataaatggtggtggatggttct 41774940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 348 - 431
Target Start/End: Complemental strand, 27768974 - 27768891
Alignment:
Q  348 aaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaacataaatggtggtgggtggttct 431  Q
    ||||||||||||||||||||||| ||         | |||||||||||||||||||| ||| ||||||||||||||||||||||    
T  27768974 aaaaatatgacacatgttattaacttaaaaaaaaatatgattttaattaaggaaatggaaatataaatggtggtgggtggttct 27768891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 384 - 431
Target Start/End: Original strand, 36676334 - 36676381
Alignment:
Q  384 gtgattttaattaaggaaatgaaaacataaatggtggtgggtggttct 431  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||    
T  36676334 gtgattttaattaaggaaatggaaacataaatggtgatgggtggttct 36676381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 353
Target Start/End: Complemental strand, 36676525 - 36676482
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataaaaat 353  Q
    |||||| ||||||||||||||||||||| ||||||||| |||||    
T  36676525 aactcttacccaacacattattcttacattcaaccaattaaaat 36676482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 4e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 310 - 431
Target Start/End: Complemental strand, 35637338 - 35637217
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 409  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||         ||||||||||||| |||||||| ||||    
T  35637338 aactctcacccaacacattattcttacacccaaccaataaaaatatgacacatgttattaactttaaaaaaagtgtgattttaatttaggaaatggaaac 35637239  T
Q  410 ataaatggtggtgggtggttct 431  Q
    |||||| |||||||||||||||    
T  35637238 ataaatagtggtgggtggttct 35637217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 310 - 431
Target Start/End: Original strand, 2663239 - 2663359
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 409  Q
    ||||||||| |||||||| ||||||||||  |||||||||||| |||||| |||||||||| ||         |||||||||||||||||||||| ||||    
T  2663239 aactctcactcaacacatcattcttacaccaaaccaataaaaa-atgacatatgttattaactttaaaaaaagtgtgattttaattaaggaaatggaaac 2663337  T
Q  410 ataaatggtggtgggtggttct 431  Q
    ||||||||||||||||||||||    
T  2663338 ataaatggtggtgggtggttct 2663359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 311 - 431
Target Start/End: Complemental strand, 49323295 - 49323176
Alignment:
Q  311 actctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaaca 410  Q
    |||||||| |||||||| ||||||||||  |||||||||||| |||||||||||| |||| ||         |||||||||||||||||||||| |||||    
T  49323295 actctcactcaacacatcattcttacacctaaccaataaaaagatgacacatgttgttaactttaaaaaag-tgtgattttaattaaggaaatggaaaca 49323197  T
Q  411 taaatggtggtgggtggttct 431  Q
    |||||||||||||||||||||    
T  49323196 taaatggtggtgggtggttct 49323176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 313 - 431
Target Start/End: Original strand, 3984450 - 3984567
Alignment:
Q  313 tctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaacata 412  Q
    ||||||| || |||| ||||||| |||| ||||||||||| ||||||||||||||||| ||         ||||||||||| |||||||||  |||||||    
T  3984450 tctcaccaaagacatcattcttaaactcgaccaataaaaaaatgacacatgttattaactttaaaaaag-tgtgattttaactaaggaaatagaaacata 3984548  T
Q  413 aatggtggtgggtggttct 431  Q
    |||||||||||||||||||    
T  3984549 aatggtggtgggtggttct 3984567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 46411243 - 46411187
Alignment:
Q  317 acccaacacattattcttacactcaaccaataaaaatatgacacatgttattaattt 373  Q
    |||||||||||||||||||||| | ||||||| | ||||||||||||||||||||||    
T  46411243 acccaacacattattcttacacccgaccaatagagatatgacacatgttattaattt 46411187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 310 - 352
Target Start/End: Original strand, 28212615 - 28212657
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataaaaa 352  Q
    |||||||| ||||||||| |||||||||| |||||||||||||    
T  28212615 aactctcatccaacacatcattcttacacccaaccaataaaaa 28212657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 4e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 310 - 431
Target Start/End: Original strand, 18058785 - 18058906
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 409  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||| ||         |||||||||||||||||||||| ||||    
T  18058785 aactctcacccaacacattattcttacacttgactaataaaaatatgacacatgttattaactttaaataaagtgtgattttaattaaggaaatggaaac 18058884  T
Q  410 ataaatggtggtgggtggttct 431  Q
    ||||||||||||||||||||||    
T  18058885 ataaatggtggtgggtggttct 18058906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 309 - 422
Target Start/End: Complemental strand, 39823016 - 39822903
Alignment:
Q  309 caactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaa 408  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||         |||||||||||||||| ||||| |||    
T  39823016 caactctcacccaacacatcattcttacacccaaccaataaaaatatgacacatgttattaaatttaaaaaaagtgtgattttaattaagaaaatggaaa 39822917  T
Q  409 cataaatggtggtg 422  Q
    ||||||||||||||    
T  39822916 cataaatggtggtg 39822903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 310 - 370
Target Start/End: Original strand, 25628886 - 25628946
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaa 370  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||| |||| |||||||    
T  25628886 aactctcacccaacacattatttttacacccaaccaataaaaatatgatacatattattaa 25628946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 310 - 431
Target Start/End: Original strand, 5737209 - 5737329
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 409  Q
    |||||||| ||||||||| |||||||||| |||| ||||||||  |||||  ||||||||| ||          |||||||| |||||||||||| ||||    
T  5737209 aactctcatccaacacatcattcttacacccaacaaataaaaaattgacatctgttattaactttaaaaaaga-gtgattttcattaaggaaatggaaac 5737307  T
Q  410 ataaatggtggtgggtggttct 431  Q
     |||||||||||||||||||||    
T  5737308 gtaaatggtggtgggtggttct 5737329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 313 - 370
Target Start/End: Complemental strand, 13466950 - 13466893
Alignment:
Q  313 tctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaa 370  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||||| || |||||||    
T  13466950 tctcatccaacacataattcttacactaaaccaataaaaatatgacatatattattaa 13466893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 4e-31; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 291 - 431
Target Start/End: Original strand, 43824194 - 43824331
Alignment:
Q  291 agatattcttgcatcaaccaactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntg-tgatt 389  Q
    ||||||||||||||||||    |||||| |||||||| |||||||||| ||||||||||||| ||||||||||||||||| ||         || |||||    
T  43824194 agatattcttgcatcaac----tctcactcaacacatcattcttacacccaaccaataaaaaaatgacacatgttattaactttaaaaaaaatgttgatt 43824289  T
Q  390 ttaattaaggaaatgaaaacataaatggtggtgggtggttct 431  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43824290 ttaattaaggaaatgaaaacataaatggtggtgggtggttct 43824331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 310 - 429
Target Start/End: Original strand, 19563370 - 19563487
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 409  Q
    ||||||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||| ||          ||||||||||||||||||||||||||    
T  19563370 aactctcacccaagacatcattcttacacccaaccaataaaaatatgacacatattattaacttttaaaaaa--gtgattttaattaaggaaatgaaaac 19563467  T
Q  410 ataaatggtggtgggtggtt 429  Q
    ||||||||||||||||||||    
T  19563468 ataaatggtggtgggtggtt 19563487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 310 - 431
Target Start/End: Complemental strand, 36384437 - 36384318
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 409  Q
    |||||||||||||||||| |||||||||| ||||||||||||| || ||| |||||||||| ||         |||||||||||||||||||||| ||||    
T  36384437 aactctcacccaacacatcattcttacacccaaccaataaaaa-ataacatatgttattaactttaaaaaag-tgtgattttaattaaggaaatggaaac 36384340  T
Q  410 ataaatggtggtgggtggttct 431  Q
    ||||||| ||||||||||||||    
T  36384339 ataaatgatggtgggtggttct 36384318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 313 - 416
Target Start/End: Complemental strand, 47459230 - 47459129
Alignment:
Q  313 tctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaacata 412  Q
    ||||||| |||||||||||||||||  ||||||||||||| ||||||||||||||||| ||          ||||||||||||||||||||| |||||||    
T  47459230 tctcacctaacacattattcttacatccaaccaataaaaaaatgacacatgttattaactttaaaaaaa--gtgattttaattaaggaaatggaaacata 47459133  T
Q  413 aatg 416  Q
    ||||    
T  47459132 aatg 47459129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 310 - 429
Target Start/End: Original strand, 41677745 - 41677864
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataa-aaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaa 408  Q
    ||||||||| ||| |||| |||||||||| || ||||||| ||| |||| |||||||||||| ||         | |||||||||||||||||||| |||    
T  41677745 aactctcactcaatacatcattcttacaccca-ccaataagaaaaatgatacatgttattaactttaaaaaatatatgattttaattaaggaaatggaaa 41677843  T
Q  409 cataaatggtggtgggtggtt 429  Q
    |||||||||||||||||||||    
T  41677844 cataaatggtggtgggtggtt 41677864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 310 - 362
Target Start/End: Original strand, 18283317 - 18283369
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacat 362  Q
    |||||||||||||||||| ||| ||||||||  ||||| ||||||||||||||    
T  18283317 aactctcacccaacacatcatttttacactctgccaatgaaaatatgacacat 18283369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 291 - 358
Target Start/End: Original strand, 37028555 - 37028618
Alignment:
Q  291 agatattcttgcatcaaccaactctcacccaacacattattcttacactcaaccaataaaaatatgac 358  Q
    ||||||||||||||||||    ||||||| || |||| |||||||||| ||||||||||||| |||||    
T  37028555 agatattcttgcatcaac----tctcaccgaatacatcattcttacacccaaccaataaaaaaatgac 37028618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 310 - 429
Target Start/End: Complemental strand, 24879200 - 24879081
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 409  Q
    ||||||||||||||||||||||||||||| | | |||||||||||||||| |||||||||| ||         |||||||||||||||||||||| ||||    
T  24879200 aactctcacccaacacattattcttacacccgatcaataaaaatatgacatatgttattaactttaaaaaaaatgtgattttaattaaggaaatggaaac 24879101  T
Q  410 ataaatggtggtgggtggtt 429  Q
    ||||||||||||||||||||    
T  24879100 ataaatggtggtgggtggtt 24879081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 320 - 429
Target Start/End: Complemental strand, 48065110 - 48065001
Alignment:
Q  320 caacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaacataaatggtg 419  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||         | |||||||| || |||||||| ||||||||| ||||    
T  48065110 caacacattattcttacacccaaccaataaaaatatgacacatgttattaactttaaaaaaagtttgattttacttgaggaaatggaaacataaacggtg 48065011  T
Q  420 gtgggtggtt 429  Q
    ||||||||||    
T  48065010 gtgggtggtt 48065001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 37025649 - 37025600
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataaaaatatgaca 359  Q
    |||||||||||||||||| ||||||||||||| ||||| |||||| ||||    
T  37025649 aactctcacccaacacatcattcttacactcatccaatcaaaataagaca 37025600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 318 - 431
Target Start/End: Original strand, 50470025 - 50470138
Alignment:
Q  318 cccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaacataaatgg 417  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||         ||| |||||| ||||||||||| ||||||||||||    
T  50470025 cccaacacattattcttacatccaaccaataaaaatatgacacatgttattaactttaaaaaaagtgtaattttatttaaggaaatggaaacataaatgg 50470124  T
Q  418 tggtgggtggttct 431  Q
    ||||||||||||||    
T  50470125 tggtgggtggttct 50470138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 310 - 429
Target Start/End: Complemental strand, 31799396 - 31799277
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaatttnnnnnnnnntgtgattttaattaaggaaatgaaaac 409  Q
    |||||||||| ||||||| ||||||| |||||| ||||||||| ||||||||||||||||| ||         ||||||||||||||| |||||||||||    
T  31799396 aactctcaccaaacacatcattcttatactcaatcaataaaaaaatgacacatgttattaactttaaaaaaagtgtgattttaattaaagaaatgaaaac 31799297  T
Q  410 ataaatggtggtgggtggtt 429  Q
    |||||||||||| |||||||    
T  31799296 ataaatggtggtaggtggtt 31799277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 310 - 362
Target Start/End: Original strand, 21508453 - 21508505
Alignment:
Q  310 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacat 362  Q
    |||||| |||||||| ||||||||||||| |||||||||||||||||||||||    
T  21508453 aactcttacccaacatattattcttacacgcaaccaataaaaatatgacacat 21508505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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