View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6815_high_4 (Length: 465)
Name: NF6815_high_4
Description: NF6815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6815_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 20 - 358
Target Start/End: Original strand, 47365398 - 47365736
Alignment:
| Q |
20 |
gttaggttccaatcggcttatcaatgtaaaggaaaaccagaagttaagcttgttaaaactaagcataatgcttctcaatcaacacatagctgcaagttaa |
119 |
Q |
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| T |
47365398 |
gttaggttccaatcggcttatcaatgtaaaggaaaaccagaagttaagcttgttaaaactaagcataatgcttctcaatcaacacatagctgcaagttaa |
47365497 |
T |
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| Q |
120 |
agattgaagaatcttcagctatcaaaattcaaacaacatttagaggctacatagtgagttttgtattcactttcacctttcatttgtatcaacttaaacc |
219 |
Q |
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| T |
47365498 |
agattgaagaatcttcagctatcaaaattcaaacaacatttagaggctacatagtgagttttgtattcacttttacctttcatttgtatcaacttaaacc |
47365597 |
T |
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| Q |
220 |
cttttttcatagttttccccttctgctaaatgctcaattatttttgtgacaaacatagtacaattaaggacagacaaactgaaggtgaacttaggaacag |
319 |
Q |
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| T |
47365598 |
cttttttcatagttttccccttctgctaaatgctcaattatttttgtgacaaacatagtacaattaaggacagacaaactgaaggtgaacttaggaacag |
47365697 |
T |
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| Q |
320 |
atactagaattttatatgcaaatttcacatatttaatac |
358 |
Q |
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| T |
47365698 |
atactagaattttatatgcaaatttcacatatttaatac |
47365736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 415 - 461
Target Start/End: Original strand, 47365793 - 47365839
Alignment:
| Q |
415 |
ctttagtggattagattgacaaactgaagtcaccttactatattctt |
461 |
Q |
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| T |
47365793 |
ctttagtggattagattgacaaactgaagtcaccttactatattctt |
47365839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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