View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6815_low_1 (Length: 1248)

Name: NF6815_low_1
Description: NF6815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6815_low_1
NF6815_low_1
[»] chr7 (2 HSPs)
chr7 (60-199)||(15298577-15298716)
chr7 (1110-1147)||(6692086-6692123)
[»] chr4 (5 HSPs)
chr4 (60-199)||(14176057-14176196)
chr4 (60-199)||(28609681-28609820)
chr4 (1117-1189)||(14177081-14177153)
chr4 (1117-1231)||(28608680-28608794)
chr4 (1125-1178)||(20706182-20706234)
[»] chr8 (3 HSPs)
chr8 (60-199)||(12932787-12932926)
chr8 (1117-1189)||(12933811-12933883)
chr8 (1140-1177)||(36999937-36999974)
[»] chr6 (2 HSPs)
chr6 (1110-1147)||(796698-796735)
chr6 (1110-1147)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (1110-1147)||(19944036-19944073)


Alignment Details
Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 199
Target Start/End: Original strand, 15298577 - 15298716
Alignment:
Q  60 atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa 159  Q
    ||||||||||| ||||| |||||||| |||||||| || ||||| ||||| || || || |||   |||||| ||||||| |||||| | ||||| | ||    
T  15298577 atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacataaccattatggagaaagtgagatgtatgctgaaaa 15298676  T
Q  160 tggctaaactgcctaagtcattctggggtgaagcagttca 199  Q
    ||||||| ||||| ||| |||| ||||||||||| |||||    
T  15298677 tggctaagctgccaaagccattttggggtgaagctgttca 15298716  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1110 - 1147
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
Q  1110 gagcagttggatgtgaaaactgcatttcttcatggaga 1147  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  6692086 gagcagttagatgtgaagactgcatttcttcatggaga 6692123  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 199
Target Start/End: Original strand, 14176057 - 14176196
Alignment:
Q  60 atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa 159  Q
    ||||||||||| ||||| |||||||| |||||||| || ||||| ||||| || || || ||| | |||||| ||||||| |||||| | ||||| | ||    
T  14176057 atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtgagatgtatgctgaaaa 14176156  T
Q  160 tggctaaactgcctaagtcattctggggtgaagcagttca 199  Q
    ||||||| ||||| ||| |||| ||||| ||||| |||||    
T  14176157 tggctaagctgccaaagccattttggggagaagctgttca 14176196  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 199
Target Start/End: Complemental strand, 28609820 - 28609681
Alignment:
Q  60 atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa 159  Q
    ||||||||||| ||||| |||||||| |||||||| || ||||| ||||| || || || ||| | |||||| ||||||| |||||| | ||||| | ||    
T  28609820 atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtgagatgtatgctgaaaa 28609721  T
Q  160 tggctaaactgcctaagtcattctggggtgaagcagttca 199  Q
    ||||||| ||||| ||| |||| ||||| ||||| |||||    
T  28609720 tggctaagctgccaaagccattttggggagaagctgttca 28609681  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1117 - 1189
Target Start/End: Original strand, 14177081 - 14177153
Alignment:
Q  1117 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttga 1189  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||||    
T  14177081 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttga 14177153  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1117 - 1231
Target Start/End: Complemental strand, 28608794 - 28608680
Alignment:
Q  1117 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 1215  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  ||||||||||||||| ||| || || ||||| | ||| |||| |    
T  28608794 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggttt 28608696  T
Q  1216 gcaaattgaataagag 1231  Q
    |||||||||| |||||    
T  28608695 gcaaattgaagaagag 28608680  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1125 - 1178
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
Q  1125 aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca 1178  Q
    |||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  20706182 aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca 20706234  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 199
Target Start/End: Original strand, 12932787 - 12932926
Alignment:
Q  60 atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa 159  Q
    ||||||||||| ||||| |||||||| |||||||| || ||||| ||||| || || || ||| | |||||| ||||||| |||||| | ||||| | ||    
T  12932787 atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtgagatgtatgctgaaaa 12932886  T
Q  160 tggctaaactgcctaagtcattctggggtgaagcagttca 199  Q
    ||||||| ||||| ||| |||| ||||  ||||| |||||    
T  12932887 tggctaagctgccaaagccattttgggtagaagctgttca 12932926  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1117 - 1189
Target Start/End: Original strand, 12933811 - 12933883
Alignment:
Q  1117 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttga 1189  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||||    
T  12933811 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttga 12933883  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1140 - 1177
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
Q  1140 catggagatttggaagaggagatttatatggagcaacc 1177  Q
    ||||| || |||||||||||||||||||||||||||||    
T  36999937 catggtgacttggaagaggagatttatatggagcaacc 36999974  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1110 - 1147
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
Q  1110 gagcagttggatgtgaaaactgcatttcttcatggaga 1147  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  796735 gagcagttagatgtgaagactgcatttcttcatggaga 796698  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1110 - 1147
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
Q  1110 gagcagttggatgtgaaaactgcatttcttcatggaga 1147  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8273092 gagcagttagatgtgaagactgcatttcttcatggaga 8273129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1110 - 1147
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
Q  1110 gagcagttggatgtgaaaactgcatttcttcatggaga 1147  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19944036 gagcagttagatgtgaagactgcatttcttcatggaga 19944073  T

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