View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6815_low_21 (Length: 212)
Name: NF6815_low_21
Description: NF6815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6815_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 39628660 - 39628515
Alignment:
| Q |
18 |
tgttcatgaagaaaaagattaatcttaaataaaatatacccgtttccttgttcaaaaaagaatggatttgctaatttaaattcactttatttttagtggg |
117 |
Q |
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| T |
39628660 |
tgttcatgaagaaaaagattaatcttaaataaaatatacctgtttccttgttcaaaaaagaatggatttgctaatttaaattcactttatttttagtggg |
39628561 |
T |
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| Q |
118 |
tacaaattagcagcaagttacgtgttaaagtttgacaaaataatttgtc |
166 |
Q |
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| T |
39628560 |
tacaaatt---agcaagttacgtgttaaagtttgacaaaataatttgtc |
39628515 |
T |
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