View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6815_low_22 (Length: 207)

Name: NF6815_low_22
Description: NF6815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6815_low_22
NF6815_low_22
[»] chr8 (5 HSPs)
chr8 (11-198)||(14373865-14374057)
chr8 (82-174)||(23394769-23394864)
chr8 (73-183)||(45527277-45527388)
chr8 (70-117)||(24482012-24482059)
chr8 (130-174)||(23283674-23283718)
[»] scaffold0050 (1 HSPs)
scaffold0050 (141-183)||(11654-11696)
[»] chr1 (4 HSPs)
chr1 (66-183)||(20306701-20306822)
chr1 (133-183)||(1992419-1992471)
chr1 (133-183)||(30001779-30001831)
chr1 (133-183)||(40946516-40946568)
[»] chr6 (3 HSPs)
chr6 (133-183)||(7428522-7428574)
chr6 (133-183)||(16279117-16279169)
chr6 (133-183)||(28365722-28365774)
[»] chr5 (2 HSPs)
chr5 (68-109)||(24539656-24539697)
chr5 (68-175)||(38015902-38016014)
[»] chr3 (5 HSPs)
chr3 (65-184)||(32976438-32976561)
chr3 (65-183)||(20934964-20935086)
chr3 (65-110)||(17764195-17764240)
chr3 (65-110)||(19065515-19065560)
chr3 (133-183)||(42400420-42400472)
[»] chr2 (3 HSPs)
chr2 (133-183)||(19040694-19040746)
chr2 (133-183)||(39839125-39839177)
chr2 (68-124)||(3395422-3395478)
[»] scaffold1750 (1 HSPs)
scaffold1750 (133-183)||(321-373)
[»] scaffold1345 (1 HSPs)
scaffold1345 (133-183)||(1845-1897)
[»] chr7 (1 HSPs)
chr7 (133-183)||(43989679-43989731)


Alignment Details
Target: chr8 (Bit Score: 124; Significance: 6e-64; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 14374057 - 14373865
Alignment:
Q  11 gacatcacatcattattcata--gtcttaaaacataaggtatatggatcatctcattttcaaagtcttaaaacattaggtatatgagtcatcttacttat 108  Q
    |||||||||||||||||||||  | |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||     
T  14374057 gacatcacatcattattcatatagccttaaaacattaggtatatggatcatctcactttcaaagtcttaaaacattaggtatatgggtcatctcacttac 14373958  T
Q  109 atactgctcaacat---ctcttgtatccaatttaaaattttaactcacttgacacattaacatctctccactaagtgttgaaatctccgtgtg 198  Q
    ||| ||||||||||   ||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||    
T  14373957 atagtgctcaacatctcctcttatatccaatttaaaattttaactcacttgacacattaacattactccactaagtgttgaactctccgtgtg 14373865  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 174
Target Start/End: Original strand, 23394769 - 23394864
Alignment:
Q  82 attaggtatatgagtcatcttacttatatactgctcaacat---ctcttgtatccaatttaaaattttaactcacttgacacattaacatctctcc 174  Q
    |||||||||||  ||||| | | ||||||| ||||||| ||   |||||| ||||||| | ||||||||||||||||||||||| ||||| |||||    
T  23394769 attaggtatatcggtcatatcatttatatattgctcaatatttgctcttgcatccaatgtgaaattttaactcacttgacacatcaacatttctcc 23394864  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 183
Target Start/End: Complemental strand, 45527388 - 45527277
Alignment:
Q  73 tcttaaaacattaggtatatgagtcatcttacttatatactgctcaacat---ctcttgtatccaatttaaaattttaactcacttgacacattaacatc 169  Q
    |||||| |||||||||||| || |||||| ||||||||  || |||||||   |||||| ||||||| |||||||||||  ||||  ||||||||  |||    
T  45527388 tcttaagacattaggtatacgactcatctaacttatatgttggtcaacatctactcttgaatccaatataaaattttaa--cactgcacacattagaatc 45527291  T
Q  170 tctccactaagtgt 183  Q
    |||||| |||||||    
T  45527290 tctccattaagtgt 45527277  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 24482059 - 24482012
Alignment:
Q  70 aagtcttaaaacattaggtatatgagtcatcttacttatatactgctc 117  Q
    ||||||||| ||||||| |||||||||||||| ||||||||| |||||    
T  24482059 aagtcttaagacattagatatatgagtcatctcacttatatattgctc 24482012  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 23283718 - 23283674
Alignment:
Q  130 atccaatttaaaattttaactcacttgacacattaacatctctcc 174  Q
    ||||||| | ||| ||||||||||||||||||||||||| |||||    
T  23283718 atccaatgtgaaactttaactcacttgacacattaacatttctcc 23283674  T

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Target: scaffold0050 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 11654 - 11696
Alignment:
Q  141 aattttaactcacttgacacattaacatctctccactaagtgt 183  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  11654 aattttaactcactttacacattaacatctctccactaagtgt 11696  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 183
Target Start/End: Original strand, 20306701 - 20306822
Alignment:
Q  66 ttcaaagtcttaaaacattaggtatatgagtcatcttacttatatactgctcaa--catctcttgtatccaatttaaaattttaactcac--ttgacaca 161  Q
    |||||||||| ||| ||||| ||||||||||||||| ||||| ||  | ||||   |  || ||| || |||| ||||||||||||||||  ||||||||    
T  20306701 ttcaaagtctgaaagcattatgtatatgagtcatctcacttaaatgtttctcatatctactattgcatacaatataaaattttaactcacacttgacaca 20306800  T
Q  162 ttaacatctctccactaagtgt 183  Q
    |||||||||||||| |||||||    
T  20306801 ttaacatctctccattaagtgt 20306822  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 1992471 - 1992419
Alignment:
Q  133 caatttaaaattttaactcac--ttgacacattaacatctctccactaagtgt 183  Q
    |||| ||||||||||||||||  |||||||||||||||||||||| |||||||    
T  1992471 caatataaaattttaactcacacttgacacattaacatctctccattaagtgt 1992419  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 30001779 - 30001831
Alignment:
Q  133 caatttaaaattttaact--cacttgacacattaacatctctccactaagtgt 183  Q
    |||| |||||||||||||  ||||||||||||||||||||||||| |||||||    
T  30001779 caatataaaattttaacttacacttgacacattaacatctctccattaagtgt 30001831  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 40946568 - 40946516
Alignment:
Q  133 caatttaaaattttaactcac--ttgacacattaacatctctccactaagtgt 183  Q
    |||| ||||||||||||||||  |||||||||||||||||||||| |||||||    
T  40946568 caatataaaattttaactcacacttgacacattaacatctctccattaagtgt 40946516  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 7428522 - 7428574
Alignment:
Q  133 caatttaaaattttaactcac--ttgacacattaacatctctccactaagtgt 183  Q
    |||| ||||||||||||||||  |||||||||||||||||||||| |||||||    
T  7428522 caatataaaattttaactcacacttgacacattaacatctctccattaagtgt 7428574  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 16279117 - 16279169
Alignment:
Q  133 caatttaaaattttaact--cacttgacacattaacatctctccactaagtgt 183  Q
    |||| |||||||||||||  |||||||||||||||||||| |||| |||||||    
T  16279117 caatataaaattttaacttacacttgacacattaacatctgtccattaagtgt 16279169  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 28365774 - 28365722
Alignment:
Q  133 caatttaaaattttaact--cacttgacacattaacatctctccactaagtgt 183  Q
    |||| |||||||||||||  |||||||||||||||||||| |||| |||||||    
T  28365774 caatataaaattttaacttacacttgacacattaacatctgtccattaagtgt 28365722  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 24539697 - 24539656
Alignment:
Q  68 caaagtcttaaaacattaggtatatgagtcatcttacttata 109  Q
    ||||||||||||  ||||||||||||||||||||||||||||    
T  24539697 caaagtcttaaagtattaggtatatgagtcatcttacttata 24539656  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 68 - 175
Target Start/End: Original strand, 38015902 - 38016014
Alignment:
Q  68 caaagtcttaaaacattaggtatatgagtcatcttacttatatactgctcaacat---ctcttgtatccaatttaaaattttaact--cacttgacacat 162  Q
    |||| ||||||  |||||| |||||||||||||| ||||||||  ||||||||||   || ||| || |||| |   |||||||||  ||||||||||||    
T  38015902 caaaatcttaagtcattagatatatgagtcatctcacttatatgttgctcaacatctactattgcattcaatgtgttattttaactcacacttgacacat 38016001  T
Q  163 taacatctctcca 175  Q
    |||||||||||||    
T  38016002 taacatctctcca 38016014  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 32976438 - 32976561
Alignment:
Q  65 tttcaaagtcttaaaacattaggtatatgagtcatcttacttatatactgctcaa--catctcttgtatccaatttaaaattttaactcac--ttgacac 160  Q
    ||||||||||| ||| ||||| ||||||||||||||| ||||| ||  | ||||   |  || ||| || |||| ||||||||||||||||  |||| ||    
T  32976438 tttcaaagtctgaaagcattatgtatatgagtcatctcacttaaatgtttctcatatctactattgcatacaatataaaattttaactcacacttgatac 32976537  T
Q  161 attaacatctctccactaagtgtt 184  Q
    ||||||||||||||| ||||||||    
T  32976538 attaacatctctccattaagtgtt 32976561  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 183
Target Start/End: Original strand, 20934964 - 20935086
Alignment:
Q  65 tttcaaagtcttaaaacattaggtatatgagtcatcttacttatatactgctcaacatctc---ttgtatccaatttaaaattttaactcact--tgaca 159  Q
    ||||||||||  ||| ||||| ||||||||||||||| ||||| ||  | |||| |||||    ||| || |||| ||||||||||||||||   |||||    
T  20934964 tttcaaagtccgaaagcattatgtatatgagtcatctcacttaaatgtttctca-catctactattgcatacaatataaaattttaactcacacctgaca 20935062  T
Q  160 cattaacatctctccactaagtgt 183  Q
    |||||||||||||||| |||||||    
T  20935063 cattaacatctctccattaagtgt 20935086  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 17764240 - 17764195
Alignment:
Q  65 tttcaaagtcttaaaacattaggtatatgagtcatcttacttatat 110  Q
    ||||||||||||||| ||||| |||||||||| |||| ||||||||    
T  17764240 tttcaaagtcttaaagcattatgtatatgagtaatctcacttatat 17764195  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 19065560 - 19065515
Alignment:
Q  65 tttcaaagtcttaaaacattaggtatatgagtcatcttacttatat 110  Q
    ||||||||||||||| ||||| |||||||||| |||| ||||||||    
T  19065560 tttcaaagtcttaaagcattatgtatatgagtaatctcacttatat 19065515  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 42400420 - 42400472
Alignment:
Q  133 caatttaaaattttaactcact--tgacacattaacatctctccactaagtgt 183  Q
    |||| ||||||||||||||||   ||||||||||||||||||||| |||||||    
T  42400420 caatataaaattttaactcacacgtgacacattaacatctctccattaagtgt 42400472  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 19040746 - 19040694
Alignment:
Q  133 caatttaaaattttaactcac--ttgacacattaacatctctccactaagtgt 183  Q
    |||| ||||||||||||||||  |||||||||||||||||||||| |||||||    
T  19040746 caatataaaattttaactcacacttgacacattaacatctctccattaagtgt 19040694  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 39839125 - 39839177
Alignment:
Q  133 caatttaaaattttaactcac--ttgacacattaacatctctccactaagtgt 183  Q
    |||| ||||||||||||||||  |||||||||||||||||||||  |||||||    
T  39839125 caatataaaattttaactcacacttgacacattaacatctctccgttaagtgt 39839177  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 3395422 - 3395478
Alignment:
Q  68 caaagtcttaaaacattaggtatatgagtcatcttacttatatactgctcaacatct 124  Q
    |||| |||||| ||||||| |||||||||||||| ||||||||  | ||||||||||    
T  3395422 caaaatcttaagacattagatatatgagtcatctcacttatatgtttctcaacatct 3395478  T

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Target: scaffold1750 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold1750
Description:

Target: scaffold1750; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 321 - 373
Alignment:
Q  133 caatttaaaattttaactcac--ttgacacattaacatctctccactaagtgt 183  Q
    |||| ||||||||||||||||  ||| |||||||||||||||||| |||||||    
T  321 caatataaaattttaactcacacttgccacattaacatctctccattaagtgt 373  T

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Target: scaffold1345 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 1897 - 1845
Alignment:
Q  133 caatttaaaattttaactcac--ttgacacattaacatctctccactaagtgt 183  Q
    |||| ||||||||||||||||  |||||||||||||||||||| | |||||||    
T  1897 caatataaaattttaactcacacttgacacattaacatctctcaattaagtgt 1845  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 43989731 - 43989679
Alignment:
Q  133 caatttaaaattttaactcac--ttgacacattaacatctctccactaagtgt 183  Q
    |||| ||||||||||||||||  |||||||||||||||||||| | |||||||    
T  43989731 caatataaaattttaactcacacttgacacattaacatctctcaattaagtgt 43989679  T

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