View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6815_low_3 (Length: 528)
Name: NF6815_low_3
Description: NF6815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6815_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Complemental strand, 17776823 - 17776315
Alignment:
| Q |
1 |
tgtctttttcttgccaatttctatgttctctttgtatgttccctttttcacatagataacataccttgtcttaccattgtctggtgcagatgccacagct |
100 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
17776823 |
tgtctttttcttgccaatttcaatgttctctttgtatgttccctttttcacatatataacataccttgtcttaccgttgtctggtgcagatgctacagct |
17776724 |
T |
|
| Q |
101 |
tgagccacagtcttgaacttgccgctgccgtcctgagccaccacaacattggcctttatgtcaccaactgaagattccaaaagtcttcgatctttacttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| |
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| T |
17776723 |
tgagccacagtcttgaacttgccgctgccgtcctgagccaccacaacattggcctttatatccccaactgaagattccaaaagtcttcgatccttacttg |
17776624 |
T |
|
| Q |
201 |
tcacccaagagggaaagttgccattcaatttttcatcaatgaatccgtcgttagcctttggaggcaagacagaaacaagcacggcaagagaagatctagc |
300 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17776623 |
tcacccaagagggaaagtcaccattcaatttttcatcaatgaatccgtcgttagcctttggaggcaagacagaaacaagcacggcaagagaagatctagc |
17776524 |
T |
|
| Q |
301 |
tctggagatcaaatcctgaaggtcactctccataacaacccgagatgtaccttctaatccatccaagcaagttgcatggttagtgagcacactacttagc |
400 |
Q |
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|||||||||||| || ||||| |||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17776523 |
tctggagatcaagtcatgaagatcactctccataacgacccgagatgaaccttctaatccatccaaacaagttgcatggttagtgagcacactacttagc |
17776424 |
T |
|
| Q |
401 |
catgtgtgtgcatcatgctgtgagtcaatgttatttttggttagagtcaacaccgagtcccacactctatccatggacaaatccattaattcctcacagt |
500 |
Q |
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| T |
17776423 |
catgtgtgtgcatcatgctgtgagtcaatgttatttttggttagagtcaacactgagtcccaaactctatccatggacaaatccattaattcctcacagt |
17776324 |
T |
|
| Q |
501 |
cattcaaag |
509 |
Q |
| |
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||||||||| |
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| T |
17776323 |
cattcaaag |
17776315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 17 - 509
Target Start/End: Complemental strand, 17807499 - 17807007
Alignment:
| Q |
17 |
atttctatgttctctttgtatgttccctttttcacatagataacataccttgtcttaccattgtctggtgcagatgccacagcttgagccacagtcttga |
116 |
Q |
| |
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||||||| ||||||||||| ||||||||||||| |||||||||||||||| | |||| |||| ||||||||||| ||||| | ||| |||||||||| |
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| T |
17807499 |
atttctacattctctttgtagattccctttttcacgtagataacataccttgccgtacctttgttaggtgcagatgcaacagcctcagcaacagtcttga |
17807400 |
T |
|
| Q |
117 |
acttgccgctgccgtcctgagccaccacaacattggcctttatgtcaccaactgaagattccaaaagtcttcgatctttacttgtcacccaagagggaaa |
216 |
Q |
| |
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||||||| || ||||| | ||||||||||||||||||||||| ||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||| |
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| T |
17807399 |
acttgccactcccgtctttagccaccacaacattggcctttacgtctccaactgaagactccaaaagccttcgatctttacttgttacccaagagggaaa |
17807300 |
T |
|
| Q |
217 |
gttgccattcaatttttcatcaatgaatccgtcgttagcctttggaggcaagacagaaacaagcacggcaagagaagatctagctctggagatcaaatcc |
316 |
Q |
| |
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|| ||||||||| ||||||||||||| |||||| | |||||||||| || || | |||||||||||| ||||| ||||||||||| | || || ||| |
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| T |
17807299 |
gtcaccattcaatgattcatcaatgaattcgtcgtgatcctttggaggtaaaacggcaacaagcacggctagagatgatctagctcttgctattaagtcc |
17807200 |
T |
|
| Q |
317 |
tgaaggtcactctccataacaacccgagatgtaccttctaatccatccaagcaagttgcatggttagtgagcacactacttagccatgtgtgtgcatcat |
416 |
Q |
| |
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|||| |||| | ||||||||| ||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| | |
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|
| T |
17807199 |
tgaatgtcattttccataacagcccgagacgtaccttctaatccatccaaacaagttgcatggtttgtgagcacactacttagccaagtgtgtgcatctt |
17807100 |
T |
|
| Q |
417 |
gctgtgagtcaatgttatttttggttagagtcaacaccgagtcccacactctatccatggacaaatccattaattcctcacagtcattcaaag |
509 |
Q |
| |
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|||||||||| || |||| ||| || ||||| ||||| |||||||| ||||| ||||||||||| | ||||| || |||||| ||||||||| |
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| T |
17807099 |
gctgtgagtccatattatcttttgtgagagttaacactgagtcccaaactctttccatggacaagttcattagtttttcacagacattcaaag |
17807007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 509
Target Start/End: Complemental strand, 17821277 - 17820782
Alignment:
| Q |
14 |
ccaatttctatgttctctttgtatgttccctttttcacatagataacataccttgtcttaccattgtctggtgcagatgccacagcttgagccacagtct |
113 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| | ||||||||||| |
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| T |
17821277 |
ccaatttctacgttctctttgtatgttccctttttcacatagataacatactttgtcttaccgttgtcaggtgcagatgccacagcctcagccacagtct |
17821178 |
T |
|
| Q |
114 |
tgaacttgccgctgccgtcctgagccaccacaacattggcctttatgtcaccaactgaagattccaaaagtcttcgatctttacttgtcacccaagaggg |
213 |
Q |
| |
|
|||||||||| || || |||||||| || |||||||| ||||||||||| ||||| | | |||||||| || |||||||| ||||| ||||| || || |
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|
| T |
17821177 |
tgaacttgccactcccatcctgagctacgacaacatttgcctttatgtccccaaccgcggtctccaaaagcctccgatctttgcttgtaacccacgatgg |
17821078 |
T |
|
| Q |
214 |
aaagttgccattcaatttttcatcaatgaatccgtcgttagcctttggaggcaagacagaaacaagcacggcaagagaagatctagctctggagatcaaa |
313 |
Q |
| |
|
||| | ||| ||||| |||||||||||||| ||| | ||||| |||| || ||| || || ||| || ||||||||||||||||| || ||||| |
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| T |
17821077 |
aaattctccaatcaatgtttcatcaatgaattggtcacgatccttttgaggaaaaacaacaagaaacacagctagagaagatctagctcttgatatcaag |
17820978 |
T |
|
| Q |
314 |
tcctgaaggtcactctccataacaacccgagatgtaccttctaatccatccaagcaagttgcatggttagtgagcacactacttagccatgtgtgtgcat |
413 |
Q |
| |
|
|||||||||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
17820977 |
tcctgaaggtcattttccataacgacccgagatgaaccttctaatccatccaagcaagttgcatggttagtgagcacactgcttagccatgtatgtgcat |
17820878 |
T |
|
| Q |
414 |
catgctgtgagtcaatgttatttttggttagagtcaacaccgagtcccacactctatccatggacaaatccattaattcctcacagtcattcaaag |
509 |
Q |
| |
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| |||||||||||||| |||||||| ||||| | |||| || |||||| | ||| | ||||||||| ||||||| || ||||||||| |||||| |
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| T |
17820877 |
cttgctgtgagtcaatattattttttgttagctttaacatcgtgtcccaaattctgttcatggacaagtccattagttgttcacagtcactcaaag |
17820782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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