View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6815_low_7 (Length: 345)
Name: NF6815_low_7
Description: NF6815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6815_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 10341268 - 10341589
Alignment:
| Q |
18 |
ctggtatggtccaaaagggtgaccaaacctgcaccacttgggtgggccagattgtctgagatccactttgagattgagttgagcttatggtgtcgtccga |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10341268 |
ctggtatagtccaaaagggtgaccaaacctgcaccaattgggtgggccagattgtctgagatccactttgagattgagttgagcttatggtgtcgtcgga |
10341367 |
T |
|
| Q |
118 |
gtctcgaatagatcattcactaaacgcacattggtttttagagtgctcgagtgattgagctcaagtgattaatgagtttcacttaaggacagatcgttca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10341368 |
gtctcgaatagatcattcactaaacgcacattggtttttagagtactcgagtgattgagctcaagtgattaatgagtttcacttaaggacagatcgttca |
10341467 |
T |
|
| Q |
218 |
ggagaatccaaattcaaatcctaaatggaataattcatagccagactttacatgtcacttgtcttctaactgaatttcagattaccaaaatatgagagaa |
317 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10341468 |
cgagaatccgaattcaaatcctaaatggaataattcatagccagactttacatgtcacttgtcttctaactgaatttaagattaccaaaatatgagagaa |
10341567 |
T |
|
| Q |
318 |
ccagagggttaacacaacaaca |
339 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10341568 |
ccagagggttaacacaacaaca |
10341589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 13126424 - 13126360
Alignment:
| Q |
167 |
agtgattgagctcaagtgattaatgagtttcacttaaggacagatcgttcaggagaatccaaatt |
231 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||| ||||||| ||||| ||||||| |
|
|
| T |
13126424 |
agtgattgagctcaagtggttaatgagtttcaccaaaggacgtatcgttcgagagaacccaaatt |
13126360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 38753592 - 38753632
Alignment:
| Q |
167 |
agtgattgagctcaagtgattaatgagtttcacttaaggac |
207 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
38753592 |
agtggttgagctcaagtggttaatgagtttcatttaaggac |
38753632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University