View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6817_high_2 (Length: 680)

Name: NF6817_high_2
Description: NF6817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6817_high_2
NF6817_high_2
[»] chr3 (13 HSPs)
chr3 (15-662)||(36320556-36321203)
chr3 (63-663)||(36313206-36313804)
chr3 (99-650)||(36333309-36333862)
chr3 (46-256)||(36327431-36327641)
chr3 (295-532)||(36325813-36326050)
chr3 (53-256)||(36335967-36336170)
chr3 (17-256)||(36325532-36325777)
chr3 (574-650)||(36326051-36326127)
chr3 (390-505)||(36327772-36327888)
chr3 (299-351)||(36336210-36336262)
chr3 (127-234)||(30621491-30621598)
chr3 (59-112)||(36309078-36309131)
chr3 (452-480)||(36336363-36336391)
[»] chr5 (2 HSPs)
chr5 (383-485)||(16053231-16053333)
chr5 (131-242)||(16052979-16053090)


Alignment Details
Target: chr3 (Bit Score: 608; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 15 - 662
Target Start/End: Original strand, 36320556 - 36321203
Alignment:
15 catcataatagttgtctcatttgtttacatttataacgatatgacagttgcaaatccttgatctgttcaatgcaccttttcgttaaatcttcactcaaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
36320556 catcataatagttgtctcatttgtttacatttataacgatatgacagttgcaaatccttgatctggtcaatgcaccttttcgtcaaatcttcactcaaat 36320655  T
115 aatgacaatcactaatgtcaagagattcaagaacagggcatttatcaataatggcacgcacaccaagttcactgagattgtgtcctttcatatcaagatg 214  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
36320656 aatgacaatcactaatgtcaagagattcaagaacaggacatttatcaataatggcacgcacaccaagttcactgagattgtgtcctttcatatcaagatg 36320755  T
215 gcatagaccaggcatcgtttcagtaatagcaagcgccattttctctgggttgcaagatcgcgtggggtaccatgcatgatatttaagcaatttcagaaaa 314  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
36320756 gcatagaccaggcatcgtttcagcaatagcaagcgccattttctctgggttgcaagatcgtgtggggtaccatgcatgatatttaagcaatttcagaaga 36320855  T
315 gggcaagatcgaccaagggcttcaagagagacctcagatataatgcaaaatataatgttaacctcccttaaccgcggaagctttctgacagcttcactaa 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
36320856 gggcaagatcgaccaagggcttcaagagagacctcagatataatgcaaaatataatgttaacctcccctaaccgcggaagctttctgacagcttcactaa 36320955  T
415 atcctttatttgtaatccccaaacaacgtacaagccacatgcaacgtaggtgactgccactgtaaaatttatttagaaagaactattaaaaaacgtttca 514  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
36320956 atcctttatttgtaatccccaaacaacttacaagccacatgcaacgtaggtgactgccactgtaaaatttatttagaaagaactattaaaaaacgtttca 36321055  T
515 tgaaaacaataagatatcaaaagttgaatgcaggaacaaattgagattttggtattaattacttgtcggctatgcatttgagggtattattggtgcaata 614  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
36321056 tgaaaacaataagttatcaaaagttgaatgcaggaacaaattgagattttggtattaattacttgtcggctatgcatttgagggtatcattggtgcaata 36321155  T
615 atactcaatatcaatgttttcaagatgaccgcaactccgtttgataac 662  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
36321156 atactcaatatcaatgttttcaagatgaccgcaactccgtttgataac 36321203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 63 - 663
Target Start/End: Original strand, 36313206 - 36313804
Alignment:
63 tgcaaatccttgatctgttcaatgcaccttttcgttaaatcttcactcaaataatgacaatcactaatgtcaagagattcaagaacagggcatttatcaa 162  Q
    |||||||| || ||||| |||||||| ||||||   ||| ||||| |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||    
36313206 tgcaaatcattaatctgatcaatgcagcttttctccaaaccttcattcaaataatgacaatcacgaatgtcaagagactcaagaagagggcatttatcaa 36313305  T
163 taatggcacgcacaccaagttcactgagattgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagtaatagcaagcgccattttctctgg 262  Q
    |||||||  |||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| ||||||| |||| |||| ||| |||| || |     
36313306 taatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgttttatcaga 36313405  T
263 gttgcaagatcgcgtggggtaccatgcatg---atatttaagcaatttcagaaaagggcaagatcgaccaagggcttcaagagagacctcagatataatg 359  Q
    ||  ||||||      |   ||| || ||    | |||||||| |||||| || |||||| |||||||||||||||||||||||||| |||| ||    |    
36313406 gtcacaagat------gtaaaccttgaatttacaaatttaagcgatttcaaaagagggcatgatcgaccaagggcttcaagagagacatcagttaggtag 36313499  T
360 caaaatataatgttaacctcccttaaccgcggaagctttctgacagcttcactaaatcctttatttgtaatccccaaacaacgtacaagccacatgcaac 459  Q
      |  |  |||   ||||| |   ||||||||||||||||| ||||||||||||||||||| || |||||||| | | |||  |||||||| ||||| ||    
36313500 tgatgtgaaattacaaccttctccaaccgcggaagctttctcacagcttcactaaatccttcatctgtaatcctcgagcaatctacaagccccatgcgac 36313599  T
460 gtaggtgactgccactgtaaaattt-atttagaaagaactattaaaaaacgtttcatgaaaacaataagatatcaaaagttgaatgcaggaacaaattga 558  Q
     |||||| ||||||||||||||||| | ||| ||||||||||||||| | ||||||| |||||| ||||||||| | || |||| ||||||| | |||||    
36313600 ataggtgtctgccactgtaaaatttgaattaaaaagaactattaaaagaagtttcataaaaacagtaagatatctacagatgaaagcaggaatacattga 36313699  T
559 gattttggtattaattacttgtcggctatgcatttgagggtattattggtgcaataatactcaatatcaatgttttcaagatgaccgcaactccgtttga 658  Q
    |||||||||||||||||||| || ||||||||||||||| ||| || |||||||||||||||||||| ||||| || ||||||||| ||||| || ||||    
36313700 gattttggtattaattacttatcagctatgcatttgaggatatcatcggtgcaataatactcaatattaatgtctttaagatgaccacaacttcggttga 36313799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 99 - 650
Target Start/End: Original strand, 36333309 - 36333862
Alignment:
99 aaatcttcactcaaataatgacaatcactaatgtcaagagattcaagaacagggcatttatcaataatggcacgcacaccaagttcactgagattgtgtc 198  Q
    ||||||||| |||||||||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||  |||||||||||| | |||| |||||||    
36333309 aaatcttcattcaaataatgacaatcacgaatgtcaagagactcaagaagagggcctttatcaataatggcgagcacaccaagttgagtgagcttgtgtc 36333408  T
199 ctttcatatcaagatggcatagaccaggcatcgtttcagtaatagcaagcgccattttctctgggttgcaagatcgcgtggggt---accatgcatgata 295  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || | || ||||||| |||| | ||   ||||  |||||||    
36333409 ctttcatatcaagatggcatagaccaggcatcgtttcagcaatagcaagcgccattttatcagagtcgcaagattgcgtagagtaccaccacacatgata 36333508  T
296 tttaagcaatttcagaaaagggcaagatcgaccaagggcttcaagagagacctcagatataatgcaaaatataatgttaacctcccttaaccgcggaagc 395  Q
    |||||||||||||| || | ||||||||||||||||  |||||  |||||| || | || |  |||| ||  |||||  || | |   ||| | ||||||    
36333509 tttaagcaatttcaaaagatggcaagatcgaccaagaacttca--agagacatcggttagacagcaatatgaaatgtccactttctccaactgtggaagc 36333606  T
396 tttctgacagcttcactaaatcctttatttgtaatccccaaacaacgtacaagccacatgcaacgtaggtgactgccactgtaaaattt-atttagaaag 494  Q
    ||||| |  |||| || ||||||||||| |||||||    |||||  |||||||| |||||||||||| |||||||||||| ||||||| | ||| ||||    
36333607 tttctcatggctttaccaaatcctttatctgtaatcaaacaacaatttacaagccgcatgcaacgtagctgactgccactgcaaaatttgaattaaaaag 36333706  T
495 aactattaaaaaacgtttcatgaaaacaataagatatcaaaagttgaatgcaggaacaaattgagattttggtattaattacttgtcggctatgcatttg 594  Q
    ||||||||| ||| | ||||  |||||| ||| ||||  | ||||||||||||||| ||||| ||||||||||||||||||||  || |||||||||||     
36333707 aactattaacaaatgcttcaaaaaaacagtaatatatatacagttgaatgcaggaataaattaagattttggtattaattactgatcagctatgcattta 36333806  T
595 agggtattattggtgcaataatactcaatatcaatgttttcaagatgaccgcaact 650  Q
    |||  || || | ||||| ||  || ||||||||||| |||||||||||| |||||    
36333807 aggagatcatcgatgcaaaaacgcttaatatcaatgtcttcaagatgaccacaact 36333862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 46 - 256
Target Start/End: Original strand, 36327431 - 36327641
Alignment:
46 tataacgatatgacagttgcaaatccttgatctgttcaatgcaccttttcgttaaatcttcactcaaataatgacaatcactaatgtcaagagattcaag 145  Q
    ||||||||  || ||||||||||||||||||||| ||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| |||||    
36327431 tataacgacttggcagttgcaaatccttgatctggtcaatgcaccttttcttcaaatcttcagtcaaataatgacaatcactaatgtcaagagactcaag 36327530  T
146 aacagggcatttatcaataatggcacgcacaccaagttcactgagattgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagtaatagca 245  Q
    || ||||||  |||||||||||||| |||||||||||||| |||| | ||||||||||| ||||||||||| |||||||||||||||||||| |||| ||    
36327531 aagagggcagctatcaataatggcaagcacaccaagttcagtgagctcgtgtcctttcaaatcaagatggcgtagaccaggcatcgtttcagcaataaca 36327630  T
246 agcgccatttt 256  Q
    | |||||||||    
36327631 aacgccatttt 36327641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 295 - 532
Target Start/End: Original strand, 36325813 - 36326050
Alignment:
295 atttaagcaatttcagaaaagggcaagatcgaccaagggcttcaagagagacctcagatataatgcaaaatataatgttaacctcccttaaccgcggaag 394  Q
    |||||||| |||||| || |||||||||||||||||||||||||||||||||||||| || |    ||  |  ||||| ||||| |  |||| |||||||    
36325813 atttaagcgatttcaaaagagggcaagatcgaccaagggcttcaagagagacctcagttagataagaatgtgaaatgtcaaccttctctaacagcggaag 36325912  T
395 ctttctgacagcttcactaaatcctttatttgtaatccccaaacaacgtacaagccacatgcaacgtaggtgactgccactgtaaaatttatttagaaag 494  Q
    |||||| |  ||||||||||||||||||||||| |||||| |||||  |||||||| ||||||| |||||||||||||||||||||||||||||| ||||    
36325913 ctttctcaaggcttcactaaatcctttatttgtcatcccccaacaatttacaagccgcatgcaaagtaggtgactgccactgtaaaatttatttaaaaag 36326012  T
495 aactattaaaaaacgtttcatgaaaacaataagatatc 532  Q
    ||||||||||||||||| ||||||||||||||||||||    
36326013 aactattaaaaaacgttccatgaaaacaataagatatc 36326050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 53 - 256
Target Start/End: Original strand, 36335967 - 36336170
Alignment:
53 atatgacagttgcaaatccttgatctgttcaatgcaccttttcgttaaatcttcactcaaataatgacaatcactaatgtcaagagattcaagaacaggg 152  Q
    ||||| ||||||||||||||||||||| ||||||||||||||| | ||||||||| |||||| | |||||  ||||||||||||| ||||||||| ||||    
36335967 atatggcagttgcaaatccttgatctggtcaatgcaccttttcttcaaatcttcattcaaattaagacaaaaactaatgtcaagatattcaagaagaggg 36336066  T
153 catttatcaataatggcacgcacaccaagttcactgagattgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagtaatagcaagcgcca 252  Q
    |||||||||||||||||  |||| ||||||||| |||| ||||||||| |||||||||||||||||||||||||||| ||||||| ||||  || |||||    
36336067 catttatcaataatggcgagcacgccaagttcagtgagcttgtgtcctctcatatcaagatggcatagaccaggcattgtttcagcaataagaaacgcca 36336166  T
253 tttt 256  Q
    ||||    
36336167 tttt 36336170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 36325532 - 36325777
Alignment:
17 tcataatagttgtctcatttgtttacatttataacgatatgacagttgcaaatccttgatctgttcaatgcaccttttcgttaaatcttcac--tcaaat 114  Q
    ||||| ||||||||||||| ||||| |  |||||| ||||| |||||||||||| |||||||  || ||||| |||||    |||||||||   ||| |     
36325532 tcatattagttgtctcattggtttataagtataacaatatgtcagttgcaaatcattgatcttgtcgatgcaacttttatgcaaatcttcatcttcatac 36325631  T
115 aatga----caatcactaatgtcaagagattcaagaacagggcatttatcaataatggcacgcacaccaagttcactgagattgtgtcctttcatatcaa 210  Q
    |||||    ||| |||||||||||||||||||||||| ||||||||||||||| |||||  |||||| |||||||||||| |||||||||||||||||||    
36325632 aatgaaagacaaacactaatgtcaagagattcaagaagagggcatttatcaattatggcgagcacacgaagttcactgagcttgtgtcctttcatatcaa 36325731  T
211 gatggcatagaccaggcatcgtttcagtaatagcaagcgccatttt 256  Q
    ||||||||||||||||||||||||||| |||| |||  ||||||||    
36325732 gatggcatagaccaggcatcgtttcagcaataacaaaagccatttt 36325777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 574 - 650
Target Start/End: Original strand, 36326051 - 36326127
Alignment:
574 tacttgtcggctatgcatttgagggtattattggtgcaataatactcaatatcaatgttttcaagatgaccgcaact 650  Q
    ||||||||||||||||||||||||  || |||||||||| ||  |||||||||||||  ||||||||||||||||||    
36326051 tacttgtcggctatgcatttgaggagatcattggtgcaaaaacgctcaatatcaatgacttcaagatgaccgcaact 36326127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 390 - 505
Target Start/End: Original strand, 36327772 - 36327888
Alignment:
390 ggaagctttctgacagcttcactaaatcctttatttgtaatccccaaacaacgtacaagccacatgcaacgtaggtgactgccactgtaaaatttat-tt 488  Q
    ||||||||||| |  |||||| ||||||||| || |||||||  | | |||  |||||||| ||||||| ||||||||||||||||||||||||||| ||    
36327772 ggaagctttctcatggcttcagtaaatccttcatctgtaatcttcgagcaatttacaagccccatgcaaagtaggtgactgccactgtaaaatttatatt 36327871  T
489 agaaagaactattaaaa 505  Q
    | |||||| ||||||||    
36327872 aaaaagaagtattaaaa 36327888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 36336210 - 36336262
Alignment:
299 aagcaatttcagaaaagggcaagatcgaccaagggcttcaagagagacctcag 351  Q
    |||| |||||| || ||||||||||||||||||||||||||||| | ||||||    
36336210 aagccatttcaaaagagggcaagatcgaccaagggcttcaagagtggcctcag 36336262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 234
Target Start/End: Original strand, 30621491 - 30621598
Alignment:
127 taatgtcaagagattcaagaacagggcatttatcaataatggcacgcacaccaagttcactgagattgtgtcctttcatatcaagatggcatagaccagg 226  Q
    ||||||| ||||||||||||| |||||||  ||||| ||| ||| |||  |||| ||||||||||  || ||| |  ||||||||||||| ||| |||||    
30621491 taatgtcgagagattcaagaagagggcatccatcaagaatagcaagcaacccaacttcactgagagggtttccatgaatatcaagatggcgtagcccagg 30621590  T
227 catcgttt 234  Q
    ||| ||||    
30621591 cattgttt 30621598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 36309078 - 36309131
Alignment:
59 cagttgcaaatccttgatctgttcaatgcaccttttcgttaaatcttcactcaa 112  Q
    |||||||||||| |||||||| ||||||||||||||| | |||  |||||||||    
36309078 cagttgcaaatcattgatctgatcaatgcaccttttcttcaaactttcactcaa 36309131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 452 - 480
Target Start/End: Original strand, 36336363 - 36336391
Alignment:
452 catgcaacgtaggtgactgccactgtaaa 480  Q
    |||||||||||||||||||||||||||||    
36336363 catgcaacgtaggtgactgccactgtaaa 36336391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 383 - 485
Target Start/End: Original strand, 16053231 - 16053333
Alignment:
383 taaccgcggaagctttctgacagcttcactaaatcctttatttgtaatccccaaacaacgtacaagccacatgcaacgtaggtgactgccactgtaaaat 482  Q
    |||| |||||||||| || |||||||||||||||||||  | || |||  |  | |||  ||||| || |||| ||||||||||||||||||||||||||    
16053231 taacagcggaagcttcctcacagcttcactaaatccttcttctgaaatttcatagcaatctacaaaccgcatggaacgtaggtgactgccactgtaaaat 16053330  T
483 tta 485  Q
    |||    
16053331 tta 16053333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 242
Target Start/End: Original strand, 16052979 - 16053090
Alignment:
131 gtcaagagattcaagaacagggcatttatcaataatggcacgcacaccaagttcactgagattgtgtcctttcatatcaagatggcatagaccaggcatc 230  Q
    ||||||||||||||||| |||||||||||||| ||||||  ||| ||||   | | |||| |||| ||| || |||||||||| |||||||  || ||||    
16052979 gtcaagagattcaagaaaagggcatttatcaagaatggcgagcaaaccatcattagtgaggttgtctcccttgatatcaagatagcatagattagtcatc 16053078  T
231 gtttcagtaata 242  Q
    || |||| ||||    
16053079 gtatcagcaata 16053090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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