View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6817_low_10 (Length: 343)
Name: NF6817_low_10
Description: NF6817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6817_low_10 |
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| [»] scaffold1075 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 342
Target Start/End: Original strand, 17006016 - 17006345
Alignment:
| Q |
11 |
tggacatcaagttcttgaacaggttgaaaacataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacct |
110 |
Q |
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| T |
17006016 |
tggacatcaagttcttcaacaggttgaaaacataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacct |
17006115 |
T |
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| Q |
111 |
acacaaggtgaccctccaaaccagnnnnnnnnnggaaaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttga |
210 |
Q |
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| T |
17006116 |
acacaaggtgaccctccaaaccagaaaaaaa--ggacaggcaagaggcaatctacaaaagatgaccctccaatctagaagaagaaaagcatattctttga |
17006213 |
T |
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| Q |
211 |
acttccatattggaaggacaatcttctgcgtcataatcttgacccgatgcacatcgagaaaaatgtgttggataatatcatatatactttgcttaacgat |
310 |
Q |
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| T |
17006214 |
acttccatattggaaggacaatcttttgcgtcataatcttgacccgatgcatatcgagaaaaatgtgttggataatatcatatatactttgcttaacgat |
17006313 |
T |
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| Q |
311 |
agttcaaagagtaaagaccatgttgatgctcg |
342 |
Q |
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| T |
17006314 |
agttcaaagaataaagaccatgttgatgctcg |
17006345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1075 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 42 - 343
Target Start/End: Complemental strand, 3050 - 2751
Alignment:
| Q |
42 |
ataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaaggtgaccctccaaaccagnnnnnnn |
141 |
Q |
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| T |
3050 |
ataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaaggtgaccctccaaaccagaaaaaaa |
2951 |
T |
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| Q |
142 |
nnggaaaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttccatattggaaggacaatcttctgcgt |
241 |
Q |
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| T |
2950 |
--ggacaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttccatattggaaggacaatcttctgcgt |
2853 |
T |
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| Q |
242 |
cataatcttgacccgatgcacatcgagaaaaatgtgttggataatatcatatatactttgcttaacgatagttcaaagagtaaagaccatgttgatgctc |
341 |
Q |
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| T |
2852 |
cataatcttgacccgatgcatatcgagaaaaatgtgttggataatatcatatatactttgcttaacgatagttcaaagagtaaagaccatgttgatgctc |
2753 |
T |
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