View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6817_low_11 (Length: 335)

Name: NF6817_low_11
Description: NF6817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6817_low_11
NF6817_low_11
[»] chr4 (2 HSPs)
chr4 (1-267)||(55336128-55336394)
chr4 (90-267)||(55330779-55330956)
[»] chr2 (10 HSPs)
chr2 (99-264)||(8431120-8431285)
chr2 (94-263)||(8375861-8376030)
chr2 (115-263)||(8439094-8439242)
chr2 (94-267)||(8411976-8412149)
chr2 (94-267)||(8434074-8434247)
chr2 (115-267)||(8395540-8395692)
chr2 (115-267)||(8405880-8406032)
chr2 (112-266)||(8417212-8417366)
chr2 (153-242)||(8403959-8404048)
chr2 (118-234)||(8417081-8417197)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 55336128 - 55336394
Alignment:
Q  1 ccaacttgtccaccatgctcaaaaccattgattgcacaagccattgatcctgccatcacaggaaccatagctgaccaaaatccttcgtcgtttcctacaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  55336128 ccaacttgtccaccatgctcaaaaccattgattgcacaagccattgatcctgccatcacaggtaccatagctgaccaaaatccgtcgtcgtttcctacaa 55336227  T
Q  101 atgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55336228 atgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttc 55336327  T
Q  201 aatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccatcca 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55336328 aatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccatcca 55336394  T

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Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 90 - 267
Target Start/End: Original strand, 55330779 - 55330956
Alignment:
Q  90 gtttcctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctc 189  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||  |||| | |||||| |||| ||| ||||||||||||||||||||     
T  55330779 gtttcctacaaatgcagaacctatagctgcaattccagtgagtaatggaccagcagttgctaaactcttattaacctttaatgctatatttccaagtctt 55330878  T
Q  190 tcatagtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccatcca 267  Q
    ||||| |||||||| |||||  | || ||||||||||||||||| |||| |||| |||||||||| ||||||||||||    
T  55330879 tcataatcttcaatatctttcattttcacaacttcaataacttctctcaattccttttctaattcctcactccatcca 55330956  T

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Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 99 - 264
Target Start/End: Original strand, 8431120 - 8431285
Alignment:
Q  99 aaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtct 198  Q
    ||||| ||| ||||| ||||||||||| | ||||||||| ||||| ||||||| ||||||||| | |||||||||||| ||||||||||| ||||| |||    
T  8431120 aaatgtagatcctatagctgcaattcctgagagtaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctatcataatct 8431219  T
Q  199 tcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccat 264  Q
    |||| |||||| |||||||  ||||||| ||| |||||||||||||||||||||||||||||||||    
T  8431220 tcaacgtcttttctctttatcacttcaacaacatccctcatttccatttctaattcttcactccat 8431285  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 94 - 263
Target Start/End: Complemental strand, 8376030 - 8375861
Alignment:
Q  94 cctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcat 193  Q
    ||||||||||  || || || ||||||||||| ||||| ||||| ||||| ||||||| ||||||||| | |||||||||||| ||||||||||| ||||    
T  8376030 cctacaaatgtcgatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcat 8375931  T
Q  194 agtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactcca 263  Q
    | ||||||  |||||| |||||||  ||||||| ||||||||||||||||||||| ||||||| ||||||    
T  8375930 aatcttcagcgtcttttctctttatcacttcaacaacttccctcatttccatttccaattctttactcca 8375861  T

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Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 115 - 263
Target Start/End: Original strand, 8439094 - 8439242
Alignment:
Q  115 gctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactct 214  Q
    ||||||||||| ||||| ||||| ||||| ||||||| ||||||||| | |||||||||||| ||||||||||| ||||| ||||||  |||||| ||||    
T  8439094 gctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcataatcttcagcgtcttttctct 8439193  T
Q  215 ttacaacttcaataacttccctcatttccatttctaattcttcactcca 263  Q
    |||  ||||||| ||||||||||||||||||||| ||||||| ||||||    
T  8439194 ttatcacttcaacaacttccctcatttccatttccaattctttactcca 8439242  T

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Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 94 - 267
Target Start/End: Original strand, 8411976 - 8412149
Alignment:
Q  94 cctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcat 193  Q
    |||||||||| ||| || |||||||||||||| ||||||||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||    
T  8411976 cctacaaatgtagatccaattgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcat 8412075  T
Q  194 agtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccatcca 267  Q
    | ||||||   ||||| ||||| |  ||||||   ||||||  |||||||||||||||||||||||||||||||    
T  8412076 aatcttcagaatcttttctcttgatcacttcagcgacttcctgcatttccatttctaattcttcactccatcca 8412149  T

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Target: chr2; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 94 - 267
Target Start/End: Original strand, 8434074 - 8434247
Alignment:
Q  94 cctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcat 193  Q
    |||||||||| ||| || |||||||||||||| ||||||||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||    
T  8434074 cctacaaatgtagatccaattgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcat 8434173  T
Q  194 agtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccatcca 267  Q
    | ||||||   ||||| ||||| |  ||||||   ||||||  |||||||||||||||||||||||||||||||    
T  8434174 aatcttcagaatcttttctcttgatcacttcagcgacttcctgcatttccatttctaattcttcactccatcca 8434247  T

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Target: chr2; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 115 - 267
Target Start/End: Complemental strand, 8395692 - 8395540
Alignment:
Q  115 gctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactct 214  Q
    ||||||||||| ||||| ||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||| ||||||  |||||| |  |    
T  8395692 gctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaaagctatgtttccaagtctgtcataatcttcagcgtcttttcgtt 8395593  T
Q  215 ttacaacttcaataacttccctcatttccatttctaattcttcactccatcca 267  Q
    |||| || |||| ||||||||||||||||||||| ||||||||||||||||||    
T  8395592 ttaccacgtcaacaacttccctcatttccatttccaattcttcactccatcca 8395540  T

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Target: chr2; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 115 - 267
Target Start/End: Original strand, 8405880 - 8406032
Alignment:
Q  115 gctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactct 214  Q
    ||||||||||| ||||| ||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||| ||||||  |||||| |  |    
T  8405880 gctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaaagctatgtttccaagtctgtcataatcttcagcgtcttttcgtt 8405979  T
Q  215 ttacaacttcaataacttccctcatttccatttctaattcttcactccatcca 267  Q
    |||| || |||| ||||||||||||||||||||| ||||||||||||||||||    
T  8405980 ttaccacgtcaacaacttccctcatttccatttccaattcttcactccatcca 8406032  T

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Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 266
Target Start/End: Original strand, 8417212 - 8417366
Alignment:
Q  112 attgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttac 211  Q
    |||||||||||||| ||||||||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||| ||||||   ||||| |    
T  8417212 attgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttcagaatcttttc 8417311  T
Q  212 tctttacaacttcaataacttccctcatttccatttctaattcttcactccatcc 266  Q
    |||| |  ||||||   ||||||  |||||||||||||||||||| |||||||||    
T  8417312 tcttgatcacttcagcgacttcctgcatttccatttctaattctttactccatcc 8417366  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 8403959 - 8404048
Alignment:
Q  153 actcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataacttccctcatttc 242  Q
    ||||||||||||||| ||||| ||||| || | ||||||||| || ||||| ||||| ||||| || |||||||| || ||| |||||||    
T  8403959 actcttgttaatctttaatgcaatattccctaatctctcataatcctcaatatcttttctcttcaccacttcaattacctccttcatttc 8404048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 8417081 - 8417197
Alignment:
Q  118 gcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactcttta 217  Q
    |||||||| ||||||||||| ||||| ||||| | ||||||||  | |||||| ||||| |||||||| || | ||| ||||||   ||||| |||||||    
T  8417081 gcaattcctgtgagtaatggccctgcaattgctaaactcttgtctaccttcaaagctatgtttccaagcctgttataatcttcagcatcttttctcttta 8417180  T
Q  218 caacttcaataacttcc 234  Q
      ||||||| |||||||    
T  8417181 tcacttcaacaacttcc 8417197  T

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