View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6817_low_12 (Length: 324)
Name: NF6817_low_12
Description: NF6817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6817_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 4 - 306
Target Start/End: Complemental strand, 44085502 - 44085197
Alignment:
| Q |
4 |
aatgagctggaaacagtgattaagctagatttgccattaggcaccagcaaatatttgaagttagtatttaattaaccaagggagtaaatnnnnnnnttga |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
44085502 |
aatgagctggaaacagtgattaagctagatttgccattaggcaccagcaaatttttgaagttagtatttaattaaccaagggagtaaataaaaaaattga |
44085403 |
T |
|
| Q |
104 |
aatccttctgagatatgataggaacattaaaatta----tatatcctagatcttaccatatatattcattggggttgttctttttt-caggtagctgttg |
198 |
Q |
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||||||||||||||||||||||||||| | ||||| ||||||| |||||| ||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
44085402 |
aatccttctgagatatgataggaacataacaattaaatatatatccaagatctaaccatatat--tcattggggttgttctttttttcaggtagctgttg |
44085305 |
T |
|
| Q |
199 |
atggagaatcttaccataagacttgcttcaagtgcacacatggaggttgtataatcagtccatcaaactatgtggcacatgaacatcgcctttattgtag |
298 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44085304 |
atggagaatcttaccataagaattgcttcaggtgcacacatggaggttgtataatcagtccatcaaactatgtggcacatgaacatcgcctttattgtag |
44085205 |
T |
|
| Q |
299 |
acatcacc |
306 |
Q |
| |
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|||||||| |
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| T |
44085204 |
acatcacc |
44085197 |
T |
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