View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6817_low_13 (Length: 302)
Name: NF6817_low_13
Description: NF6817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6817_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 5149953 - 5150043
Alignment:
| Q |
177 |
tagcacaacctataattaggaaatccagtcttattccttacaaattcaacattgacctaaggaggaacattgttgaaccaagaataagaag |
267 |
Q |
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| T |
5149953 |
tagcaaaacctaaaattaggaaaacctgtcttattctttacaaattcaacattaacctgagaaggtacattgttgaaccaagaataagaag |
5150043 |
T |
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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 14722000 - 14722044
Alignment:
| Q |
1 |
ttgctaaccccactaaatttgaccatctatgaacatcactttaca |
45 |
Q |
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| T |
14722000 |
ttgctaaccccactaaatttgaccatctatgaacatcactttaca |
14722044 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 26448371 - 26448452
Alignment:
| Q |
186 |
ctataattaggaaatccagtcttattccttacaaattcaacattgacctaaggaggaacattgttgaaccaagaataagaag |
267 |
Q |
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| T |
26448371 |
ctataattcggaaagtctgtcttgttcctaacaaattcaacattaacctgaggaggtatagtgttgaaccaagaataagaag |
26448452 |
T |
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