View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6817_low_15 (Length: 260)
Name: NF6817_low_15
Description: NF6817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6817_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 44085978 - 44085719
Alignment:
| Q |
1 |
acaaggtttcaagattttttgctggaactcaagaaaaatgtgttggttgcaagaaaacagtgtacccaattgaaaaggtatgttaaataacttaacttta |
100 |
Q |
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| T |
44085978 |
acaaggtttcaagattttttgctggaactcaagaaaaatgtgttggttgcaagaaaacagtgtacccaattgaaaaggtatattatataacttaactata |
44085879 |
T |
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| Q |
101 |
ttctttagtaaactttactgattgggaaatgtccctttaaaagtaattttgcctctaaaatgagtaaggttgaatctatccttaaatgttaacatcatgg |
200 |
Q |
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| T |
44085878 |
ttctttagtaaactttactgattgggaaatgtccctttaaaagtaattttgcctctaaaatgagtaaggttgaatctatccttaaatgttaacatcatgg |
44085779 |
T |
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| Q |
201 |
tacactttaaatgatattaatggtgaatatattcttatttctcactttaaagaacctctt |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44085778 |
tacactttaaatgatattaatggtgaatatattcttatttctcactttaaagaacctctt |
44085719 |
T |
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