View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6817_low_16 (Length: 250)

Name: NF6817_low_16
Description: NF6817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6817_low_16
NF6817_low_16
[»] chr8 (3 HSPs)
chr8 (1-184)||(25864075-25864258)
chr8 (68-136)||(32327384-32327452)
chr8 (191-238)||(25864287-25864334)
[»] chr3 (2 HSPs)
chr3 (1-184)||(5912998-5913181)
chr3 (192-238)||(5913209-5913255)
[»] chr1 (6 HSPs)
chr1 (1-184)||(10463313-10463496)
chr1 (1-184)||(43732967-43733150)
chr1 (1-184)||(50672128-50672311)
chr1 (191-238)||(50672054-50672101)
chr1 (191-238)||(10463237-10463284)
chr1 (191-238)||(43732891-43732938)
[»] chr7 (3 HSPs)
chr7 (1-184)||(48577443-48577627)
chr7 (1-184)||(32955231-32955415)
chr7 (191-238)||(48577654-48577701)
[»] scaffold0755 (1 HSPs)
scaffold0755 (68-136)||(4716-4784)
[»] chr4 (1 HSPs)
chr4 (191-238)||(53953354-53953401)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 25864075 - 25864258
Alignment:
Q  1 catgtaatcaaaaatgaattaattgaatatacataacaagatctaagccttctttagagactttccttcccaatagcagctgtccagtcttcttgttcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25864075 catgtaatcaaaaatgaattaattgaatacacataacaagatctaagccttctttagagactttccttcccaatagcagctgtccagtcttcttgttcaa 25864174  T
Q  101 aatccttcaaacagatccaaccttcctgcaacccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaa 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25864175 aatccttcaaacagatccaaccttcctgcaacccttgacacaccaaaaatcgtcttgataagccaaaaatcttattcaccaaaa 25864258  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 32327452 - 32327384
Alignment:
Q  68 tcccaatagcagctgtccagtcttcttgttcaaaatccttcaaacagatccaaccttcctgcaaccctt 136  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  32327452 tcccagtagcagctgtccagtcttcttgttcaaaacccttcaaacagatccaaccctcctgcaaccctt 32327384  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 25864287 - 25864334
Alignment:
Q  191 ttgagaaggagggatgtgaatagacgacggcctgtgataaattgatgt 238  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  25864287 ttgagaaggagggatgtgaataaccgacggcctgtgataaattgatgt 25864334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 5912998 - 5913181
Alignment:
Q  1 catgtaatcaaaaatgaattaattgaatatacataacaagatctaagccttctttagagactttccttcccaatagcagctgtccagtcttcttgttcaa 100  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5912998 catgtaataaaaaatgaattaattgaatacacataacaagatctaagccttctttagagactttccttcccaatagcagctgtccagtcttcttgttcaa 5913097  T
Q  101 aatccttcaaacagatccaaccttcctgcaacccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaa 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5913098 aatccttcaaacagatccaaccttcctgcaacccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaa 5913181  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 5913209 - 5913255
Alignment:
Q  192 tgagaaggagggatgtgaatagacgacggcctgtgataaattgatgt 238  Q
    |||||||||||||||||||||| || |||||||||||||||||||||    
T  5913209 tgagaaggagggatgtgaatagccggcggcctgtgataaattgatgt 5913255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 10463496 - 10463313
Alignment:
Q  1 catgtaatcaaaaatgaattaattgaatatacataacaagatctaagccttctttagagactttccttcccaatagcagctgtccagtcttcttgttcaa 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10463496 catgtaatcaaaaatgaattaattgaatacacataacaagatctaagccttctttagagactttccatcccaatagcagctgtccagtcttcttgttcaa 10463397  T
Q  101 aatccttcaaacagatccaaccttcctgcaacccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaa 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10463396 aatccttcaaacagatccaaccttcctgcaacccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaa 10463313  T

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Target: chr1; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 43733150 - 43732967
Alignment:
Q  1 catgtaatcaaaaatgaattaattgaatatacataacaagatctaagccttctttagagactttccttcccaatagcagctgtccagtcttcttgttcaa 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43733150 catgtaatcaaaaatgaattaattgaatacacataacaagatctaagccttctttagagactttccatcccaatagcagctgtccagtcttcttgttcaa 43733051  T
Q  101 aatccttcaaacagatccaaccttcctgcaacccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaa 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43733050 aatccttcaaacagatccaaccttcctgcaacccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaa 43732967  T

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Target: chr1; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 50672311 - 50672128
Alignment:
Q  1 catgtaatcaaaaatgaattaattgaatatacataacaagatctaagccttctttagagactttccttcccaatagcagctgtccagtcttcttgttcaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  50672311 catgtaatcaaaaatgaattaattgaatacacataacaagatctaagccttctttagagactttccttcccaatagcagttgtccagtcttcttgttcaa 50672212  T
Q  101 aatccttcaaacagatccaaccttcctgcaacccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaa 184  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50672211 aatccttcaaacagatccaaccttcctgcaatccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaa 50672128  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 50672101 - 50672054
Alignment:
Q  191 ttgagaaggagggatgtgaatagacgacggcctgtgataaattgatgt 238  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  50672101 ttgagaaggagggatgtgaataaccgacggcctgtgataaattgatgt 50672054  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 10463284 - 10463237
Alignment:
Q  191 ttgagaaggagggatgtgaatagacgacggcctgtgataaattgatgt 238  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  10463284 ttgagaaggagggatgtgaataaccgacgacctgtgataaattgatgt 10463237  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 43732938 - 43732891
Alignment:
Q  191 ttgagaaggagggatgtgaatagacgacggcctgtgataaattgatgt 238  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  43732938 ttgagaaggagggatgtgaataaccgacgacctgtgataaattgatgt 43732891  T

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Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 48577443 - 48577627
Alignment:
Q  1 catgtaatcaaaaa-tgaattaattgaatatacataacaagatctaagccttctttagagactttccttcccaatagcagctgtccagtcttcttgttca 99  Q
    |||||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  48577443 catgtaatcaaaatctgacttaattgaatacacataacaagatctaagccttctttagagactttccttcccaataacagctgtccaatcttcttgttca 48577542  T
Q  100 aaatccttcaaacagatccaaccttcctgcaacccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaa 184  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48577543 aaatccttcaaacagatccaaccttcctgcaaccattgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaa 48577627  T

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Target: chr7; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 32955231 - 32955415
Alignment:
Q  1 catgtaatcaaaaa-tgaattaattgaatatacataacaagatctaagccttctttagagactttccttcccaatagcagctgtccagtcttcttgttca 99  Q
    |||||||||||||  ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32955231 catgtaatcaaaatctgacttgattgaatacacataacaagatctaagccttctttagagactttccttcccaatagcagctgtccagttttcttgttca 32955330  T
Q  100 aaatccttcaaacagatccaaccttcctgcaacccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaa 184  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32955331 aaatctttcaaacagatccaacctccctgcaacccttgacacaccaaaaatcatcttgataagccaaaaatcttattcaccaaaa 32955415  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 48577654 - 48577701
Alignment:
Q  191 ttgagaaggagggatgtgaatagacgacggcctgtgataaattgatgt 238  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||    
T  48577654 ttgagaaggagggatgtgaatagccggcggcctgtgataaattgatgt 48577701  T

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Target: scaffold0755 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 4784 - 4716
Alignment:
Q  68 tcccaatagcagctgtccagtcttcttgttcaaaatccttcaaacagatccaaccttcctgcaaccctt 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4784 tcccaatagcagctgtccagtcttcttgttcaaaatccttcaaacagatccaaccctcctgcaaccctt 4716  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 53953354 - 53953401
Alignment:
Q  191 ttgagaaggagggatgtgaatagacgacggcctgtgataaattgatgt 238  Q
    ||||||||||||||||||||| | || |||||||||||| ||||||||    
T  53953354 ttgagaaggagggatgtgaatcgccggcggcctgtgatagattgatgt 53953401  T

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