View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6817_low_18 (Length: 240)
Name: NF6817_low_18
Description: NF6817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6817_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 30658247 - 30658025
Alignment:
| Q |
1 |
ctaatggttttcgaacttgtctccggaattcacatcctcatcatctttcagactaatgaaaatctcatcatcgtcaaaccctacaaacagatgaaaacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30658247 |
ctaatggttttcgaacttgtctccggaattcacatcctcatcatctttcagactaatgaaaatctcatcatcgtcaaaccctacaaacagatgaaaacat |
30658148 |
T |
|
| Q |
101 |
gttagttactgacattttctacctggttagtctaccagcagtttccacatttttgtttaacagtttccacatttattaaaatggtttacaatttaccttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30658147 |
gttagttactgacattttctacctggttagtctaccagcagtttccacatttttgtttaacagtttccacatttattaaaatggtttacaatttaccttc |
30658048 |
T |
|
| Q |
201 |
acacatttcttccggttcatcgt |
223 |
Q |
| |
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|||||||||||| |||||||||| |
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| T |
30658047 |
acacatttcttcaggttcatcgt |
30658025 |
T |
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