View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6817_low_19 (Length: 239)

Name: NF6817_low_19
Description: NF6817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6817_low_19
NF6817_low_19
[»] chr5 (9 HSPs)
chr5 (33-239)||(14961921-14962127)
chr5 (167-239)||(13604858-13604930)
chr5 (152-235)||(2568651-2568734)
chr5 (176-239)||(37588378-37588441)
chr5 (206-239)||(37948500-37948533)
chr5 (210-239)||(39257439-39257468)
chr5 (167-228)||(41957460-41957521)
chr5 (176-228)||(14182399-14182450)
chr5 (203-239)||(35960402-35960438)
[»] chr6 (9 HSPs)
chr6 (167-236)||(4006706-4006775)
chr6 (93-160)||(2455891-2455958)
chr6 (198-239)||(2117392-2117433)
chr6 (176-239)||(8035166-8035229)
chr6 (205-239)||(5623145-5623179)
chr6 (153-239)||(21024200-21024286)
chr6 (200-237)||(316853-316890)
chr6 (211-239)||(2112189-2112217)
chr6 (176-239)||(30523649-30523711)
[»] chr3 (10 HSPs)
chr3 (90-239)||(45590653-45590802)
chr3 (176-239)||(14548739-14548802)
chr3 (176-239)||(22214677-22214740)
chr3 (205-236)||(51510240-51510271)
chr3 (201-239)||(2318633-2318671)
chr3 (90-140)||(38684485-38684535)
chr3 (167-228)||(1217809-1217870)
chr3 (203-239)||(20874349-20874385)
chr3 (176-228)||(39602228-39602280)
chr3 (207-239)||(49845565-49845597)
[»] chr1 (13 HSPs)
chr1 (90-158)||(23373232-23373300)
chr1 (176-239)||(7218092-7218155)
chr1 (153-235)||(7136993-7137075)
chr1 (176-239)||(4215361-4215424)
chr1 (176-239)||(15361702-15361765)
chr1 (176-239)||(25479570-25479633)
chr1 (89-159)||(27807197-27807267)
chr1 (189-239)||(33527178-33527228)
chr1 (90-120)||(49517190-49517220)
chr1 (198-239)||(25005837-25005878)
chr1 (90-159)||(37241740-37241808)
chr1 (94-158)||(5756605-5756669)
chr1 (183-239)||(37241847-37241903)
[»] chr2 (6 HSPs)
chr2 (177-228)||(9477952-9478003)
chr2 (183-236)||(29510584-29510637)
chr2 (152-239)||(6993718-6993805)
chr2 (198-239)||(37276735-37276776)
chr2 (198-239)||(39983331-39983372)
chr2 (177-237)||(16503343-16503403)
[»] chr7 (10 HSPs)
chr7 (166-235)||(2825239-2825308)
chr7 (203-239)||(25558236-25558272)
chr7 (203-239)||(25558434-25558470)
chr7 (90-158)||(30751602-30751670)
chr7 (177-239)||(33709437-33709499)
chr7 (210-239)||(9527142-9527171)
chr7 (167-228)||(24363610-24363671)
chr7 (206-239)||(25507338-25507371)
chr7 (90-159)||(43854960-43855029)
chr7 (166-226)||(17944351-17944411)
[»] chr4 (6 HSPs)
chr4 (90-239)||(35405936-35406085)
chr4 (198-236)||(42866060-42866098)
chr4 (89-130)||(1133039-1133080)
chr4 (166-235)||(7694018-7694087)
chr4 (176-229)||(55414438-55414491)
chr4 (167-239)||(8468937-8469009)
[»] chr8 (5 HSPs)
chr8 (176-235)||(31862486-31862545)
chr8 (198-239)||(29973070-29973111)
chr8 (210-239)||(43704430-43704459)
chr8 (203-239)||(12132822-12132858)
chr8 (207-235)||(30040595-30040623)
[»] scaffold0024 (1 HSPs)
scaffold0024 (211-239)||(27565-27593)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 33 - 239
Target Start/End: Complemental strand, 14962127 - 14961921
Alignment:
Q  33 tccagaatataaatttgttttcaaatcatcatatcgtcaaacttttcatcttgtacgtgtttgaattgacttatttaaacttatctaccgacacaagcat 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14962127 tccagaatataaatttgttttcaaatcatcatatcgtcaaacttttcatcttgtacgtgtttgaattaacttatttaaacttatctaccgacacaagcat 14962028  T
Q  133 ttgagagattgtttcggagagcttatggcataatcatatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagttt 232  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14962027 ttgagagactgtttcggagagcttatggcatgatcatatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagttt 14961928  T
Q  233 atatgaa 239  Q
    |||||||    
T  14961927 atatgaa 14961921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 13604858 - 13604930
Alignment:
Q  167 catatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    |||| ||| ||||||||||| ||||||||  |||  | ||||||||||||||||| |||| ||||||||||||    
T  13604858 catacgttgttttcaacttattttcataagctcttcaagataacttatgaaaacagcttaaagtttatatgaa 13604930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 2568734 - 2568651
Alignment:
Q  152 agcttatggcataatcatatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttata 235  Q
    |||||||| |||| ||||| |||||||| | |||| |||||| |  |||| | |||| |||||||||||||||||||| |||||    
T  2568734 agcttatgacatattcataagttatttttagcttattttcattagctctccatgatagcttatgaaaacaacttatagcttata 2568651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 37588378 - 37588441
Alignment:
Q  176 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    |||||| |||| || |||||  |||| || |||||||||||||||||||||||| |||||||||    
T  37588378 ttttcagcttatttccataagctctccagaataacttatgaaaacaacttatagcttatatgaa 37588441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 37948533 - 37948500
Alignment:
Q  206 ataacttatgaaaacaacttatagtttatatgaa 239  Q
    ||||||||||||||||||||||| ||||||||||    
T  37948533 ataacttatgaaaacaacttataatttatatgaa 37948500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 239
Target Start/End: Original strand, 39257439 - 39257468
Alignment:
Q  210 cttatgaaaacaacttatagtttatatgaa 239  Q
    ||||||||||||||||||||||||||||||    
T  39257439 cttatgaaaacaacttatagtttatatgaa 39257468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 41957460 - 41957521
Alignment:
Q  167 catatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttata 228  Q
    |||| ||| |||||| |||| ||||||||  ||||||||||| |||||||||||| ||||||    
T  41957460 cataagttgttttcatcttattttcataagttctcaaggatagcttatgaaaacagcttata 41957521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 14182399 - 14182450
Alignment:
Q  176 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttata 228  Q
    ||||||||||| ||||||||  ||||| |||||||||||||||||| ||||||    
T  14182399 ttttcaacttattttcataagttctca-ggataacttatgaaaacagcttata 14182450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 35960438 - 35960402
Alignment:
Q  203 aggataacttatgaaaacaacttatagtttatatgaa 239  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  35960438 aggatagcttatgaaatcaacttatagtttatatgaa 35960402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 4006775 - 4006706
Alignment:
Q  167 catatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatat 236  Q
    |||| |||||||||| |||| ||||||||| ||||| ||||| |||||||||||||||||||| ||||||    
T  4006775 cataagttattttcagcttattttcataacctctcagggatagcttatgaaaacaacttatagcttatat 4006706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 2455958 - 2455891
Alignment:
Q  93 ttgaattgacttatttaaacttatctaccgacacaagcatttgagagattgtttcggagagcttatgg 160  Q
    |||||||||||||||| | ||||||||||| || ||||| ||| |||||||||| | |||||||||||    
T  2455958 ttgaattgacttatttgagcttatctaccggcataagcacttgcgagattgtttagaagagcttatgg 2455891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 2117433 - 2117392
Alignment:
Q  198 tctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    |||| ||||||||||||||||||||||||||| |||||||||    
T  2117433 tctctaggataacttatgaaaacaacttatagattatatgaa 2117392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 8035166 - 8035229
Alignment:
Q  176 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    ||||||||||| |||| |||  | || ||||||||||||||||||||||| ||| |||||||||    
T  8035166 ttttcaacttattttcgtaagctttctaggataacttatgaaaacaacttctagcttatatgaa 8035229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 5623179 - 5623145
Alignment:
Q  205 gataacttatgaaaacaacttatagtttatatgaa 239  Q
    |||| ||||||||||||||||||||||||||||||    
T  5623179 gatagcttatgaaaacaacttatagtttatatgaa 5623145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 239
Target Start/End: Complemental strand, 21024286 - 21024200
Alignment:
Q  153 gcttatggcataatcatatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    ||||||| |||| ||||||||| ||||||||||| ||||||||  |||| ||||||   |||||||| | ||||| | |||||||||    
T  21024286 gcttatgacatattcatatgttgttttcaacttattttcataagttctcgaggatagtatatgaaaatagcttattgcttatatgaa 21024200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 316853 - 316890
Alignment:
Q  200 tcaaggataacttatgaaaacaacttatagtttatatg 237  Q
    |||||||||||||||||||||||||||||  |||||||    
T  316853 tcaaggataacttatgaaaacaacttatatcttatatg 316890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 239
Target Start/End: Complemental strand, 2112217 - 2112189
Alignment:
Q  211 ttatgaaaacaacttatagtttatatgaa 239  Q
    |||||||||||||||||||||||||||||    
T  2112217 ttatgaaaacaacttatagtttatatgaa 2112189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 30523711 - 30523649
Alignment:
Q  176 ttttcaacttaatttc-ataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    ||||||||| |||||| ||||| ||||||||||| |||||||||| ||||||||| |||||||||    
T  30523711 ttttcaact-aatttctataacctctcaaggatagcttatgaaaa-aacttatagcttatatgaa 30523649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 90 - 239
Target Start/End: Complemental strand, 45590802 - 45590653
Alignment:
Q  90 tgtttgaattgacttatttaaacttatctaccgacacaagcatttgagagattgtttcggagagcttatggcataatcatatgttattttcaacttaatt 189  Q
    ||||||||||||||| ||| |||||||||||   || ||||| ||| |||| ||||| ||||||||||||  |    |||| ||||||||||||||| ||    
T  45590802 tgtttgaattgacttttttgaacttatctactagcataagcacttgtgagactgtttgggagagcttatgataagtccataagttattttcaacttattt 45590703  T
Q  190 tcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
     ||| |  | ||  |||||||||||||||||||||||||  |||||||||    
T  45590702 ccatgatttgtcctggataacttatgaaaacaacttatatcttatatgaa 45590653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 14548739 - 14548802
Alignment:
Q  176 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    |||||| |||| || |||||  |||| || |||||||||||||||||||||||| |||||||||    
T  14548739 ttttcagcttatttccataagctctccagaataacttatgaaaacaacttatagcttatatgaa 14548802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 22214677 - 22214740
Alignment:
Q  176 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    |||||| |||| || | ||| ||||| |||||| |||||||||||||||||||| |||||||||    
T  22214677 ttttcagcttatttccgtaatgtctctaggatagcttatgaaaacaacttataggttatatgaa 22214740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 236
Target Start/End: Original strand, 51510240 - 51510271
Alignment:
Q  205 gataacttatgaaaacaacttatagtttatat 236  Q
    ||||||||||||||||||||||||||||||||    
T  51510240 gataacttatgaaaacaacttatagtttatat 51510271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 2318671 - 2318633
Alignment:
Q  201 caaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  2318671 caagaataacttataaaaacaacttatagtttatatgaa 2318633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 38684535 - 38684485
Alignment:
Q  90 tgtttgaattgacttatttaaacttatctaccgacacaagcatttgagaga 140  Q
    ||||||||||| ||||||||||||||||||||| || || |||||| ||||    
T  38684535 tgtttgaattggcttatttaaacttatctaccggcataaacatttgtgaga 38684485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 1217809 - 1217870
Alignment:
Q  167 catatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttata 228  Q
    |||| ||| |||||| |||| ||||||||  ||||||||||| |||||||||||| ||||||    
T  1217809 cataagttgttttcatcttactttcataagttctcaaggatagcttatgaaaacagcttata 1217870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 20874349 - 20874385
Alignment:
Q  203 aggataacttatgaaaacaacttatagtttatatgaa 239  Q
    |||||| |||||||||||| |||||||||||||||||    
T  20874349 aggatagcttatgaaaacagcttatagtttatatgaa 20874385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 39602228 - 39602280
Alignment:
Q  176 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttata 228  Q
    ||||||||||| ||||||||  |||||| |||| |||||||||||| ||||||    
T  39602228 ttttcaacttattttcataagttctcaaagatagcttatgaaaacagcttata 39602280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 49845565 - 49845597
Alignment:
Q  207 taacttatgaaaacaacttatagtttatatgaa 239  Q
    ||||||||||||||||||||| |||||||||||    
T  49845565 taacttatgaaaacaacttatggtttatatgaa 49845597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 23373232 - 23373300
Alignment:
Q  90 tgtttgaattgacttatttaaacttatctaccgacacaagcatttgagagattgtttcggagagcttat 158  Q
    ||||||||||||||||||| ||||| ||||| || | ||||| ||| |||||||||| |||||||||||    
T  23373232 tgtttgaattgacttatttgaacttgtctactgatataagcacttgtgagattgtttgggagagcttat 23373300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 7218092 - 7218155
Alignment:
Q  176 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    ||||||||||| ||||||||  |||| ||||||  ||||||||||||||||||| |||||||||    
T  7218092 ttttcaacttattttcataagttctccaggataggttatgaaaacaacttatagcttatatgaa 7218155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 7136993 - 7137075
Alignment:
Q  153 gcttatggcataatcatatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttata 235  Q
    ||||||| |||| ||||| |||||||||| |||| ||||||||  |||| | |||| |||||||||||| ||||||| |||||    
T  7136993 gcttatgacatattcataagttattttcagcttattttcataagttctccaagatagcttatgaaaacagcttatagattata 7137075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 4215424 - 4215361
Alignment:
Q  176 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    |||||| |||| || |||||  |||||||||||||||| |||||| ||| ||||||||||||||    
T  4215424 ttttcaccttatttgcataaactctcaaggataacttacgaaaacgactcatagtttatatgaa 4215361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 15361765 - 15361702
Alignment:
Q  176 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    |||||| ||||||| |||||  ||||||| ||| |||||||||||| ||||||| |||||||||    
T  15361765 ttttcagcttaattccataaactctcaagaatatcttatgaaaacagcttatagcttatatgaa 15361702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 25479633 - 25479570
Alignment:
Q  176 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    |||||| |||| ||||||||  |||| |||||| ||||||||||||||||||||  ||||||||    
T  25479633 ttttcagcttattttcataagctctctaggatagcttatgaaaacaacttatagcctatatgaa 25479570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 27807267 - 27807197
Alignment:
Q  89 gtgtttgaattgacttatttaaacttatctaccgacacaagcatttgagagattgtttcggagagcttatg 159  Q
    |||||| ||||||||||||| ||||| ||||| |||| |||||||||  ||| |||||  |||||||||||    
T  27807267 gtgtttaaattgacttatttgaacttttctactgacataagcatttgtaagactgtttgagagagcttatg 27807197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 33527178 - 33527228
Alignment:
Q  189 ttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    |||||||  |||| ||||||||||||||||||| ||||||| |||||||||    
T  33527178 ttcataagatctcgaggataacttatgaaaacagcttatagattatatgaa 33527228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 120
Target Start/End: Complemental strand, 49517220 - 49517190
Alignment:
Q  90 tgtttgaattgacttatttaaacttatctac 120  Q
    |||||||||||||||||||||||||||||||    
T  49517220 tgtttgaattgacttatttaaacttatctac 49517190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 25005837 - 25005878
Alignment:
Q  198 tctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    |||| |||||| |||||||||||||||||||| |||||||||    
T  25005837 tctccaggatagcttatgaaaacaacttatagcttatatgaa 25005878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 37241740 - 37241808
Alignment:
Q  90 tgtttgaattgacttatttaaacttatctaccgacacaagcatttgagagattgtttcggagagcttatg 159  Q
    |||||| |||||||||||||| ||||||||| | || ||||| ||| |||||||||| ||||||| ||||    
T  37241740 tgtttggattgacttatttaagcttatctactg-cataagcacttgcgagattgtttaggagagcatatg 37241808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 158
Target Start/End: Original strand, 5756605 - 5756669
Alignment:
Q  94 tgaattgacttatttaaacttatctaccgacacaagcatttgagagattgtttcggagagcttat 158  Q
    ||||||||||||||||  ||||| ||||| || ||||| ||| |||  |||||||||||||||||    
T  5756605 tgaattgacttatttacgcttatttaccggcataagcacttgtgagcgtgtttcggagagcttat 5756669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 37241847 - 37241903
Alignment:
Q  183 cttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    |||| ||||||||  |||| |||||| |||||||||||||||| ||| |||||||||    
T  37241847 cttattttcataagctctctaggatatcttatgaaaacaacttctagcttatatgaa 37241903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 9478003 - 9477952
Alignment:
Q  177 tttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttata 228  Q
    |||||||||| ||||||||| |||| |||||| |||||||||||||||||||    
T  9478003 tttcaacttattttcataacctctccaggatagcttatgaaaacaacttata 9477952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 29510637 - 29510584
Alignment:
Q  183 cttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatat 236  Q
    |||||||||||||  |||||| |||| |||| ||||||||||||||||||||||    
T  29510637 cttaatttcataagctctcaaagatagcttaggaaaacaacttatagtttatat 29510584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 6993718 - 6993805
Alignment:
Q  152 agcttatggcataatcatatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    ||||||||||||   |||| || ||||| | |||| ||||||||  ||||||| ||| |||||||||||||| ||||| |||||||||    
T  6993718 agcttatggcatgtccataagtcatttttagcttattttcataagctctcaagcatagcttatgaaaacaacctatagcttatatgaa 6993805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 37276776 - 37276735
Alignment:
Q  198 tctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    |||| ||||||||||||||||||||||||||  |||||||||    
T  37276776 tctccaggataacttatgaaaacaacttataacttatatgaa 37276735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 39983372 - 39983331
Alignment:
Q  198 tctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    |||| |||||| |||||||||||||||||||| |||||||||    
T  39983372 tctccaggatagcttatgaaaacaacttatagcttatatgaa 39983331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 16503403 - 16503343
Alignment:
Q  177 tttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatg 237  Q
    ||||| |||| ||||||||| |||| | |||||||||||| || ||||||||| |||||||    
T  16503403 tttcagcttattttcataacctctccaagataacttatgagaagaacttatagcttatatg 16503343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 2825239 - 2825308
Alignment:
Q  166 tcatatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttata 235  Q
    ||||| |||||||||| |||| || |||||  |||| |||||| ||| ||||||||||||||||||||||    
T  2825239 tcataagttattttcagcttatttccataagttctctaggatagcttgtgaaaacaacttatagtttata 2825308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 25558236 - 25558272
Alignment:
Q  203 aggataacttatgaaaacaacttatagtttatatgaa 239  Q
    ||||||||||||||||||||||||||| |||||||||    
T  25558236 aggataacttatgaaaacaacttatagcttatatgaa 25558272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 25558434 - 25558470
Alignment:
Q  203 aggataacttatgaaaacaacttatagtttatatgaa 239  Q
    ||||||||||||||||||||||||||| |||||||||    
T  25558434 aggataacttatgaaaacaacttatagcttatatgaa 25558470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 30751670 - 30751602
Alignment:
Q  90 tgtttgaattgacttatttaaacttatctaccgacacaagcatttgagagattgtttcggagagcttat 158  Q
    |||||| ||| |||||||||||||||||||| |||| ||||| ||| | || ||||| |||||||||||    
T  30751670 tgtttggattaacttatttaaacttatctactgacataagcacttgtgcgactgtttgggagagcttat 30751602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 33709499 - 33709437
Alignment:
Q  177 tttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    |||||||||| |||||| | ||||| || ||||||||||||||||  |||||| |||||||||    
T  33709499 tttcaacttattttcatcaagtctcgagaataacttatgaaaacagtttatagcttatatgaa 33709437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 239
Target Start/End: Original strand, 9527142 - 9527171
Alignment:
Q  210 cttatgaaaacaacttatagtttatatgaa 239  Q
    ||||||||||||||||||||||||||||||    
T  9527142 cttatgaaaacaacttatagtttatatgaa 9527171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 24363610 - 24363671
Alignment:
Q  167 catatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttata 228  Q
    |||| ||| |||||| |||| || |||||| |||| |||||| |||||||||||||||||||    
T  24363610 cataagttgttttcagcttatttccataacctctccaggatagcttatgaaaacaacttata 24363671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 25507371 - 25507338
Alignment:
Q  206 ataacttatgaaaacaacttatagtttatatgaa 239  Q
    |||||||||||||||||||||||| |||||||||    
T  25507371 ataacttatgaaaacaacttatagcttatatgaa 25507338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 43854960 - 43855029
Alignment:
Q  90 tgtttgaattgacttatttaaacttatctaccgacacaagcatttgagagattgtttcggagagcttatg 159  Q
    ||||||||||| ||||||| |||||||||||  ||| ||||||||| || | | ||| ||||||||||||    
T  43854960 tgtttgaattggcttatttgaacttatctactaacataagcatttgcgacactatttgggagagcttatg 43855029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 17944351 - 17944411
Alignment:
Q  166 tcatatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaactta 226  Q
    ||||||| | |||||| |||||||||||||  | || | ||||||||||||||||||||||    
T  17944351 tcatatgcttttttcagcttaatttcataaattatccaagataacttatgaaaacaactta 17944411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 239
Target Start/End: Complemental strand, 35406085 - 35405936
Alignment:
Q  90 tgtttgaattgacttatttaaacttatctaccgacacaagcatttgagagattgtttcggagagcttatggcataatcatatgttattttcaacttaatt 189  Q
    ||||||||||| ||||||||||| |||||||   |||||  | ||| |||| ||||| |  ||||||| |  ||  ||||| | | |||||| |||| ||    
T  35406085 tgtttgaattggcttatttaaacctatctacaagcacaaatacttgtgagactgtttagttgagcttaagaaatgttcataagctgttttcagcttactt 35405986  T
Q  190 tcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
     |||||  |||| |||||||||| |||||||||| |||||||||||||||    
T  35405985 ccataagctctccaggataacttttgaaaacaacctatagtttatatgaa 35405936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 42866098 - 42866060
Alignment:
Q  198 tctcaaggataacttatgaaaacaacttatagtttatat 236  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  42866098 tctcaaggatagcttatgaaaacaacttatagcttatat 42866060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 1133080 - 1133039
Alignment:
Q  89 gtgtttgaattgacttatttaaacttatctaccgacacaagc 130  Q
    |||||||||||||||||||| | ||||||||| |||||||||    
T  1133080 gtgtttgaattgacttatttgagcttatctactgacacaagc 1133039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 7694018 - 7694087
Alignment:
Q  166 tcatatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttata 235  Q
    ||||| ||| |||||| |||| || |||||  |||| ||||||||||||||||||| ||||||| |||||    
T  7694018 tcataagttgttttcagcttatttccataaactctccaggataacttatgaaaacagcttatagcttata 7694087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 55414438 - 55414491
Alignment:
Q  176 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatag 229  Q
    ||||||||||| ||||||||  |||| | |||||||||||||||||| ||||||    
T  55414438 ttttcaacttattttcataagttctccaagataacttatgaaaacaatttatag 55414491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 239
Target Start/End: Complemental strand, 8469009 - 8468937
Alignment:
Q  167 catatgttattttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    |||| ||| ||||||  ||| ||||||||  |||| || ||||||||||||||||||| |||| |||||||||    
T  8469009 cataagttgttttcagattattttcataagctctctagaataacttatgaaaacaactaatagcttatatgaa 8468937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 31862545 - 31862486
Alignment:
Q  176 ttttcaacttaatttcataacgtctcaaggataacttatgaaaacaacttatagtttata 235  Q
    |||||| |||| ||||||||  |||| ||||||||||||||||||| ||||||| |||||    
T  31862545 ttttcagcttattttcataagctctctaggataacttatgaaaacatcttatagcttata 31862486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 29973111 - 29973070
Alignment:
Q  198 tctcaaggataacttatgaaaacaacttatagtttatatgaa 239  Q
    ||||||||||| |||||||||||||||||||| |||| ||||    
T  29973111 tctcaaggatagcttatgaaaacaacttatagcttatgtgaa 29973070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 239
Target Start/End: Original strand, 43704430 - 43704459
Alignment:
Q  210 cttatgaaaacaacttatagtttatatgaa 239  Q
    ||||||||||||||||||||||||||||||    
T  43704430 cttatgaaaacaacttatagtttatatgaa 43704459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 12132858 - 12132822
Alignment:
Q  203 aggataacttatgaaaacaacttatagtttatatgaa 239  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  12132858 aggataacttatgaaaacagcttatagcttatatgaa 12132822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 235
Target Start/End: Original strand, 30040595 - 30040623
Alignment:
Q  207 taacttatgaaaacaacttatagtttata 235  Q
    |||||||||||||||||||||||||||||    
T  30040595 taacttatgaaaacaacttatagtttata 30040623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 239
Target Start/End: Complemental strand, 27593 - 27565
Alignment:
Q  211 ttatgaaaacaacttatagtttatatgaa 239  Q
    |||||||||||||||||||||||||||||    
T  27593 ttatgaaaacaacttatagtttatatgaa 27565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University