View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6817_low_21 (Length: 231)
Name: NF6817_low_21
Description: NF6817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6817_low_21 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 43895680 - 43895896
Alignment:
| Q |
15 |
ccaccaacatcaactagagtctccacacctttgaagccatcataattctccaacatttctctcatgtagggcaatgacatcccagacatggaagcataaa |
114 |
Q |
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| T |
43895680 |
ccaccaacatcaactagagtctccacacctttgaagccatcataattctccaacatttccctcatgtagggcaatgacatcccagacatggaagcataaa |
43895779 |
T |
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| Q |
115 |
acaaactcatttcttctggtcccttcgtgcaatatgcatatgctgcttctccgtgcagcttctcgaacggttccacagttggatcctccaccgcgtctcc |
214 |
Q |
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| T |
43895780 |
acaaactcatttcttctggtcccttcgtgcaatatgcatatgctgcttctccgtgcagcttctcgaacggttccacagttggatcctccaccgcgtctcc |
43895879 |
T |
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| Q |
215 |
caccaacggccatgctc |
231 |
Q |
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| T |
43895880 |
caccaacggccatgctc |
43895896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 43907184 - 43907400
Alignment:
| Q |
15 |
ccaccaacatcaactagagtctccacacctttgaagccatcataattctccaacatttctctcatgtagggcaatgacatcccagacatggaagcataaa |
114 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| ||||| |||||| |||||||||||||| |||| |
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| T |
43907184 |
ccaccaacatcaactagagattccacacctttgaagccatcatacttctccaacatttcattcatgtggggcattgacattccagacatggaagcgtaaa |
43907283 |
T |
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| Q |
115 |
acaaactcatttcttctggtcccttcgtgcaatatgcatatgctgcttctccgtgcagcttctcgaacggttccacagttggatcctccaccgcgtctcc |
214 |
Q |
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| T |
43907284 |
acaaactcatttcatctggtctcttcatgcagtatgcatatgctccttctccgtgtagcttctcgaacggctcaacagttggatcctccaccgcctctcc |
43907383 |
T |
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| Q |
215 |
caccaacggccatgctc |
231 |
Q |
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| T |
43907384 |
caccagcggccatgctc |
43907400 |
T |
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