View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6817_low_23 (Length: 217)
Name: NF6817_low_23
Description: NF6817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6817_low_23 |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (4 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 25863717 - 25863932
Alignment:
| Q |
1 |
accattagagcagaatgaaaagcaacacaataccttttaaaattcagtaagcaggaaattttaagcagtatatctggttccaactcaactcaataaagta |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| |||||||||||||||| |
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| T |
25863717 |
accattagagcagaatgaaaagcaacgcaataccttttaaaattcagtaagcaagaaattttaagtagtatatctgattccaattcaactcaataaagta |
25863816 |
T |
|
| Q |
101 |
tgtctacaatttagctaattatgtattattgatggaaagcttgttatattagtataccattattctacaattgattcgaaacagcaccaataccattatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || |
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| T |
25863817 |
tgtctacaatttagctaattatgtattattgatggaaagcttgttatattagtatacca-tattctacaattgattcaaaacagcaccaataccattgtt |
25863915 |
T |
|
| Q |
201 |
ttcaatcaagagtaacc |
217 |
Q |
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||||||||||||||||| |
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| T |
25863916 |
ttcaatcaagagtaacc |
25863932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 32327660 - 32327608
Alignment:
| Q |
165 |
ctacaattgattcgaaacagcaccaataccattattttcaatcaagagtaacc |
217 |
Q |
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||||||||||||| ||||||||||||| |||| |||| || ||||||||||| |
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| T |
32327660 |
ctacaattgattcataacagcaccaataacattgttttaaaccaagagtaacc |
32327608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 43733505 - 43733291
Alignment:
| Q |
1 |
accattagagcagaatgaaaagcaacacaataccttttaaaattcagtaagcaggaaattttaagcagtatatctggttccaactcaactcaataaagta |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
43733505 |
accattagagcagaatgaaaagcaacgcaataccttttaaaattcagtaagcaggaaattttaagtagtatatctggttccaattcaactcaataaagta |
43733406 |
T |
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| Q |
101 |
tgtctacaatttagctaattatgtattattgatggaaagcttgttatattagtataccattattctacaattgattcgaaacagcaccaataccattatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||| || |
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| T |
43733405 |
tgtctacaatttagctaattatgtattattgatggaaagcttgttatattagtatacca-tattctacaattgattcaaaacagcaccaata-cattgtt |
43733308 |
T |
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| Q |
201 |
ttcaatcaagagtaacc |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
43733307 |
ttcaatcaagagtaacc |
43733291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 10463851 - 10463637
Alignment:
| Q |
1 |
accattagagcagaatgaaaagcaacacaataccttttaaaattcagtaagcaggaaattttaagcagtatatctggttccaactcaactcaataaagta |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| |||||||||||||||| |
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| T |
10463851 |
accattagagcagaatgaaaagcaacgcaataccttttaaaattcagtaagcaagaaattttaagtagtatatctgattccaattcaactcaataaagta |
10463752 |
T |
|
| Q |
101 |
tgtctacaatttagctaattatgtattattgatggaaagcttgttatattagtataccattattctacaattgattcgaaacagcaccaataccattatt |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||| || |
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| T |
10463751 |
tgtctacaatttagctaattatgtattattgatggaaagcttgttatattagtatacca-tattctacaattgattcaaaacagcaccaata-cattgtt |
10463654 |
T |
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| Q |
201 |
ttcaatcaagagtaacc |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
10463653 |
ttcaatcaagagtaacc |
10463637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 47973416 - 47973559
Alignment:
| Q |
1 |
accattagagcagaatgaaaagcaacacaataccttttaaaattcagtaagcaggaaattttaagcagtatatctggttccaactcaactcaataaagta |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
47973416 |
accattcgagcagaatgaaaagcaacacaataccttttaaaattcagtaagcaggaaattt-aagcagtatatctggttccaattcaactcaataaagta |
47973514 |
T |
|
| Q |
101 |
tgtctacaatttagctaattatgtattattgatggaaagcttgtt |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47973515 |
tgtctacaatttagctaattatgtattattgatggaaagcatgtt |
47973559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 50672529 - 50672452
Alignment:
| Q |
140 |
cttgttatattagtataccattattctacaattgattcgaaacagcaccaataccattattttcaatcaagagtaacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |
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| T |
50672529 |
cttgttatattagtataccattattctacaattgattcaaaacatcaccaataccattgttttcaatcaagagtaacc |
50672452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 32955014 - 32955091
Alignment:
| Q |
140 |
cttgttatattagtataccattattctacaattgattcgaaacagcaccaataccattattttcaatcaagagtaacc |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
32955014 |
cttgttatattagtataccattattctacaattgattcaaaacagcaccaataccattgttttcaatcaagagtaacc |
32955091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 48577225 - 48577302
Alignment:
| Q |
140 |
cttgttatattagtataccattattctacaattgattcgaaacagcaccaataccattattttcaatcaagagtaacc |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||| |
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| T |
48577225 |
cttgttatattagtataccattattctacaattgattcaaaacagcaccaatactattgttttcaatcaagagtaacc |
48577302 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 5912793 - 5912870
Alignment:
| Q |
140 |
cttgttatattagtataccattattctacaattgattcgaaacagcaccaataccattattttcaatcaagagtaacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
5912793 |
cttgttatattagtataccattattctacaattgattcaaaacagcaccaataccattgttttcaatcaagagtaacc |
5912870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 51569492 - 51569375
Alignment:
| Q |
3 |
cattagagcagaatgaaaagcaacacaataccttttaaaattcagtaagcaggaaattttaag-cagtatatctggttccaactcaactcaataaagtat |
101 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||| | ||| | |||| || || |||||||||||| | ||||||||||||||| |
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| T |
51569492 |
cattagagcagaatgaaaagcaacacataaacttttaaaattcagtaaacgggagctagtaagacaatacatctggttccaatttaactcaataaagtat |
51569393 |
T |
|
| Q |
102 |
gtctacaatttagctaat |
119 |
Q |
| |
|
||||||||| ||||||| |
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|
| T |
51569392 |
gtctacaataaagctaat |
51569375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 42309270 - 42309377
Alignment:
| Q |
3 |
cattagagcagaatgaaaagcaacacaataccttttaaaattcagtaagcaggaaattttaag-cagtatatctggttccaactcaactcaataaagtat |
101 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||| ||||||||||||| |||||||||| || ||||| ||||| |||||| | ||||||||||||||| |
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| T |
42309270 |
cattagagtagaatgaaaagcaacacttaaacttctaaaattcagtaaataggaaattttcagacagtacatctgcttccaatttaactcaataaagtat |
42309369 |
T |
|
| Q |
102 |
gtctacaa |
109 |
Q |
| |
|
|||||||| |
|
|
| T |
42309370 |
gtctacaa |
42309377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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