View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6817_low_3 (Length: 544)
Name: NF6817_low_3
Description: NF6817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6817_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 207 - 537
Target Start/End: Original strand, 28058918 - 28059249
Alignment:
| Q |
207 |
ttttcataaatgttcataaaatttgacaggatctcaactaattaatgactacaaaaagaa-tatatacaaaatttaacattgtaagaatgattgcagagt |
305 |
Q |
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| T |
28058918 |
ttttcataaatgttcataaaatttgacaggatctcaactaattaatgactacaaaaagaaatatatacaaaatttaactttgtaagaatgattgcagagt |
28059017 |
T |
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| Q |
306 |
taaacaaacaaaagcagcaacaatcatcaaacatatacttcattaatgatttttaagatcaaacacctacatctatccatagttgtcccaccaaaacttc |
405 |
Q |
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| T |
28059018 |
taaacaaacaaaagcagcaacaatcatgaaacatatacttcattaatgatttttaagatcaaacacctacatctatccatagttgtcccaccaaaacttc |
28059117 |
T |
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| Q |
406 |
catcaatgatcaaaatgaaaatgacaaacaacttctccagcccagtaatatcacatggatccttccggtcttgtttaataacgtctctatagcgttatag |
505 |
Q |
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| T |
28059118 |
catcaatgatcaaaatgaaaatgacaaacaacttctccagcccagtaatatcacatggatccttccggtcttgtttaataacgtctctatagcgttatag |
28059217 |
T |
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| Q |
506 |
gcaatgtagaggaatatgatcaaatcgatatt |
537 |
Q |
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| T |
28059218 |
gcaatgtagaggaatatgatcaaatcgatatt |
28059249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 28058670 - 28058846
Alignment:
| Q |
28 |
attggaaatgtagtttgttcatcttatataattcactaaaaatggcatcagatctatttgtgattttgctagtt-aaaatctaccatatacattatcttc |
126 |
Q |
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| T |
28058670 |
attggaaatgtagcttgtccatcttatataattcactaaaaatggcatcagatctatttgtgattttgctagttaaaaatctaccatatacattatcttc |
28058769 |
T |
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| Q |
127 |
ctctttgaatgtcactaaactttcattaaaaaacatgtgtttgagc-aatccattgaaatataagatattcatgcat |
202 |
Q |
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| T |
28058770 |
ctttttgaatgtcactaaactttcattaaaaaacatgtgtttgagcaaatccattgaaatataagatattcatgcat |
28058846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 451
Target Start/End: Original strand, 28067387 - 28067443
Alignment:
| Q |
395 |
accaaaacttccatcaatgatcaaaatgaaaatgacaaacaacttctccagcccagt |
451 |
Q |
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| T |
28067387 |
accaaaacttccatcaatgaccaaaagaaaaatcacaatcaacatctccagcccagt |
28067443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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