View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6817_low_5 (Length: 429)
Name: NF6817_low_5
Description: NF6817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6817_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 408
Target Start/End: Complemental strand, 43118130 - 43117746
Alignment:
| Q |
20 |
catgtaatcaaattcgcgtagtacaatatcaattatccatcatatcttgcagaatttatcttcaattctgaatcagcgtacgttgttttttcagattcag |
119 |
Q |
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| T |
43118130 |
catgtaatcaaattcgcgtagtacaatatcaattatccatcatatcttgcagaaattatcttcaattctgaatcagcgtacgttgttttttcagattcag |
43118031 |
T |
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| Q |
120 |
aattgattgacgttcctatttccaatcccaattgtcagttggctctcgtatttggatttccaatcgtcattgcattatgagattctacaccgcccgttac |
219 |
Q |
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| T |
43118030 |
aattgattgacgttcctatttccaatcccaattgtcagttggctctcgtatttggatttccaatcgtcattgcattatgagattctacaccgcccgttac |
43117931 |
T |
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| Q |
220 |
atttcaagaatataaccatgttcatgaaattggaaattcttcctgcatcaaggtggttgcttagggcgtgcttcaggtcttcaattattctctgcaacat |
319 |
Q |
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| T |
43117930 |
atttcaagaatataaccatgttcatgaaattggaaattgttcctgcatcaaggtggttgcttagggcgtgcttcaggtcttcaattattctctgcaac-- |
43117833 |
T |
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| Q |
320 |
atatatgatacaacatgatatccacaagcttgacttcagaatacatgcagatgacaatgaaactataacaatctctgatattggcataa |
408 |
Q |
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| T |
43117832 |
--atatgatacaacatgatatccacaagcttgacttcagaatacatgcagatgacaatgaaactataacaatctctgatattggcataa |
43117746 |
T |
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