View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6817_low_6 (Length: 408)
Name: NF6817_low_6
Description: NF6817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6817_low_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 21 - 408
Target Start/End: Original strand, 14961468 - 14961855
Alignment:
| Q |
21 |
agcctatgattgctagccaagcaatgttatctgctacattttcatgcataaaccaatacgaatttagggtgctttcttgggttcaaaataattcacacac |
120 |
Q |
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| T |
14961468 |
agcctatgattgctagccaagcaatgttatctgctacattttcatgcataaaccaatacgactttagggtgctttcttgggttcaaaataattcacacac |
14961567 |
T |
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| Q |
121 |
ctcgacaaagtttatgggtcaaatttacgtctctgtagataactagtttctgatggtcatgtgcatacttgttatttccatcttccaagtgttactgata |
220 |
Q |
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| T |
14961568 |
ctcgacaaagtttatgggtcaaatttatgtctctgtagataactagtttctgatggtcatgtgcatacttgttatttccatcttccaagtgttactgata |
14961667 |
T |
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| Q |
221 |
ttgcaaatgcatatggtaaagttcctctcatctccatattccatgtggtactagttgtttttatactctttttctttatcattattagggtcacaatttg |
320 |
Q |
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| T |
14961668 |
ttgcaaatgcatatggtaaagttcctctcatctccatattccatgtggtactagttgtttttatactctttttctttatcattattagggtcacaatttg |
14961767 |
T |
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| Q |
321 |
gaggaatcgatttggatagacaactttaagccttattgttagcggccaacactcagtgtgagttaggcaccataatttgcgacactta |
408 |
Q |
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| T |
14961768 |
gaggaatcgatttggatagacaactttaagccttattgttagcggccaacactcagtgtgagttaggccccataatttgcgacactta |
14961855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 243
Target Start/End: Complemental strand, 26762586 - 26762469
Alignment:
| Q |
127 |
aaagtttatgggtcaaatttacgtctctgtagataactagtttctgatggtcatgtgcatacttgttatttccatcttccaa-gtgttactgatattgca |
225 |
Q |
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|||||| ||||||||||||||| | |||| ||| | |||| ||||| | |||||||| |||| |||||||||||||| | ||| ||||||||| |
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| T |
26762586 |
aaagttcatgggtcaaatttacatacctgttattaattggtttttgatgattatgtgcatcgttgtcgtttccatcttccaaagcactacagatattgca |
26762487 |
T |
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| Q |
226 |
aatgcatatggtaaagtt |
243 |
Q |
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| T |
26762486 |
aatgcatatggtaaagtt |
26762469 |
T |
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