View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6817_low_7 (Length: 380)

Name: NF6817_low_7
Description: NF6817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6817_low_7
NF6817_low_7
[»] chr3 (1 HSPs)
chr3 (16-380)||(30658338-30658693)


Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 380
Target Start/End: Complemental strand, 30658693 - 30658338
Alignment:
Q  16 caccatatgagatcatcttactctgtt----atggtttttcaaagctctcaaacaccatttggcaaaaagagacaatttctacttcagtttttcatgtct 111  Q
    |||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30658693 caccatatgagatcatcttactctgtttgttatggtttttcaaagctctcaaacaccatttggccaaaagagacaatttctacttcagtttttcatgtct 30658594  T
Q  112 cttaactcatgttttttaatgtttgtcacaaagattctaaatcaaattagctttcaacaattcataaaaggaacgaacaatctaagcaaataaaaataaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||| ||||||||||||||||    
T  30658593 cttaactcatgttttttaatgtttgtcacaaagattctaaatcaaattagctttcaacaattcataa-------------tcttagcaaataaaaataaa 30658507  T
Q  212 aatggaggttccagtttgcaaaagttgtaaactctagtagtgtaagaaatactacaaaactatcaaatactgtacaaaaaccttccaaatcataccaact 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30658506 aatggaggttccagtttgcaaaagttgtaaactctagtagtgtaagaaatactacaaaactatcaaatactgtacaaaaaccttccaaatcataccaact 30658407  T
Q  312 aatacatcaacaataacttggttcctctcacatgtccagtaaactccaccctactttccctctattttt 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30658406 aatacatcaacaataacttggttcctctcacatgtccagtaaactccaccctagtttccctctattttt 30658338  T

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