View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6817_low_8 (Length: 364)
Name: NF6817_low_8
Description: NF6817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6817_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 344
Target Start/End: Complemental strand, 29122850 - 29122516
Alignment:
| Q |
10 |
tgaagaatgcgctaacaaaatatgatgaactaccaagtacggttcaaatgttgagttgcccttggtgctctctataacgcaaaatggaggagaacatcgc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29122850 |
tgaagaatgcgctaacaaaatatgatgaactaccaagtacggttcaaatgttgagttgcccttggtgctctctataacgcaaaatggaggagaacatcgc |
29122751 |
T |
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| Q |
110 |
ttaggtggggagattccttgatcataactacctacagcgaagatattgggctcgttcacagtagtccaatacttgactctatccccgaactctctaaaac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29122750 |
ttaggtggggagattccttgatcataactacctacagcgaagatattgggctcgttcacagtagtccaatacttgactctatccccgaactctctaaaac |
29122651 |
T |
|
| Q |
210 |
acacatctgcatagtttgtgaagtcttttctgcatcaaaattcaagtcatgattctcaattctgtcnnnnnnnntgcaatataaggacatttcttcctaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29122650 |
acacatctgcatagtttgtgaagtcttttctgcatcaaaattcaagtcatgattctcaattctgtcaaaaaaaatgcaatataaggacatttcttcctaa |
29122551 |
T |
|
| Q |
310 |
gcacaaaaagtacgtctttaagaatacgaaatctt |
344 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
29122550 |
gcacaaaaagtacgtctttaagaatacgaaatctt |
29122516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 344
Target Start/End: Complemental strand, 39631762 - 39631430
Alignment:
| Q |
10 |
tgaagaatgcgctaacaaaatatgatgaactaccaagtacggttcaaatgttgagttgcccttggtgctctctataacgcaaaatggaggagaacatcgc |
109 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
39631762 |
tgaagaatgcgctagcaaaatatgatgaactaccaagtacggttcaaatgttgagttacccttggtgctctctataaggcaaaatggtggagaacatcgc |
39631663 |
T |
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| Q |
110 |
ttaggtggggagattccttgatcataactacctacagcgaagatattgggctcgttcacagtagtccaatacttgactctatccccgaactctctaaaac |
209 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39631662 |
tgaggtggggagattccttgatcataactacctacagcgaagatattgggctcgttcacagtagtccaatacttgactctatccccgaactctctaaaac |
39631563 |
T |
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| Q |
210 |
acacatctgcatagtttgtgaagtcttttctgcatcaaaattcaagtcatgattctcaattctgtcnnnnnnnntgcaatataaggacatttcttcctaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | |||||||||||||||||||||||||| |
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| T |
39631562 |
acacatctgcatagtttgtgaagtcttttctgcatcaaaattcaagtcttaattctcaattctgac--aaaaaatgcaatataaggacatttcttcctaa |
39631465 |
T |
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| Q |
310 |
gcacaaaaagtacgtctttaagaatacgaaatctt |
344 |
Q |
| |
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|||||| |||||| | ||| |||||| |||||||| |
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| T |
39631464 |
gcacaacaagtactttttttagaatatgaaatctt |
39631430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 344
Target Start/End: Complemental strand, 39642857 - 39642525
Alignment:
| Q |
10 |
tgaagaatgcgctaacaaaatatgatgaactaccaagtacggttcaaatgttgagttgcccttggtgctctctataacgcaaaatggaggagaacatcgc |
109 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39642857 |
tgaagaatgcgctagcaaaatatgatgaactaccaagtacggttcaaatgttgagttacccttggtgctctctataaggcaaaatggaggagaacatcgc |
39642758 |
T |
|
| Q |
110 |
ttaggtggggagattccttgatcataactacctacagcgaagatattgggctcgttcacagtagtccaatacttgactctatccccgaactctctaaaac |
209 |
Q |
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| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39642757 |
tgaggtggggtgattccttgatcataactacctacagcgaagatattgggctcgttcacagtagtccaatacttgactctatccccgaactctctaaaac |
39642658 |
T |
|
| Q |
210 |
acacatctgcatagtttgtgaagtcttttctgcatcaaaattcaagtcatgattctcaattctgtcnnnnnnnntgcaatataaggacatttcttcctaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||| ||||| |
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| T |
39642657 |
acacatctgcatagtttgtgaagtcttttctgcatcaaaattcaagtcataattctcaattctgtc--aaaaaatgcagtataaggacatttctccctaa |
39642560 |
T |
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| Q |
310 |
gcacaaaaagtacgtctttaagaatacgaaatctt |
344 |
Q |
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|||||| |||| | | ||| ||||||||||||||| |
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| T |
39642559 |
gcacaataagtgctttttttagaatacgaaatctt |
39642525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 5219299 - 5219357
Alignment:
| Q |
185 |
actctatccccgaactctctaaaacacacatctgcatagtttgtgaagtcttttctgca |
243 |
Q |
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||||||||||| ||||||||||| || ||||||||||| |||||| ||||||||||| |
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| T |
5219299 |
actctatccccaaactctctaaagcatacatctgcatatgctgtgaaatcttttctgca |
5219357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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